RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CXCL9Q07325 125 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 LRP8Q14114 963 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 BCL2A1Q16548 175 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 BOLA3Q53S33 107 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 GRTP1Q5TC63 336 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CYS1Q717R9 158 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CLEC14AQ86T13 490 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CNTD1Q8N815 330 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CLEC4CQ8WTT0 213 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 SLC45A3Q96JT2 553 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CPNE1Q99829 537 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 LPIN3Q9BQK8 851 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 DEFB129Q9H1M3 183 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 SIX4Q9UIU6 781 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 OAZ3Q9UMX2 235 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 RUVBL2Q9Y230 463 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 SPO11Q9Y5K1 396 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 SNX9Q9Y5X1 595 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 ATP6AP2A0A1C7CYW4 349 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 A6NL46 340 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 TRIM64CA6NLI5 447 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 SDHDO14521 159 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 TOR1BO14657 336 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CLOCKO15516 846 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 CNOT3O75175 753 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 ATP6AP2O75787 350 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 POLBP06746 335 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 GOT1P17174 413 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 NAMPTP43490 491 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 DNASE1L3Q13609 305 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 RFTN1Q14699 578 aaPredicted RBP13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 KCNJ8Q15842 424 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 UNC93B1Q9H1C4 597 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 GTSE1Q9NYZ3 720 aa13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 TMA7Q9Y2S6 64 aaKnown RBP13.61□□□□□ -0.23
CCDC88C-201ENST00000331194 KCNK1O00180 336 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 RNF103O00237 685 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 BAIAP3O94812 1187 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 GJB1P08034 283 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 PABPC1P11940 636 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 MYF6P23409 242 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 SPRP35270 261 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 LIMK2P53671 638 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 KCNC4Q03721 635 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 BFSP2Q13515 415 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 GRM3Q14832 879 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 PGS1Q32NB8 556 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 ZNF667Q5HYK9 610 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 TBCELQ5QJ74 424 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 LIPMQ5VYY2 423 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 PMF1Q6P1K2 205 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 DHFR2Q86XF0 187 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 TMCO5AQ8N6Q1 288 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 Q8N9G6 341 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 KDM1BQ8NB78 822 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 CCNYQ8ND76 341 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 TMEM176AQ96HP8 235 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 TCF12Q99081 682 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 DOK1Q99704 481 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 VPS33BQ9H267 617 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 NANOGQ9H9S0 305 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 IARS2Q9NSE4 1012 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 GGA3Q9NZ52 723 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 RGPD3A6NKT7 1758 aaPredicted RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 RGPD4Q7Z3J3 1758 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 COL4A5P29400 1685 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 H0YCG3 227 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 KDM1AO60341 852 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 DLX3O60479 287 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 PIGRP01833 764 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 EEF1B2P24534 225 aaKnown RBP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 ELK4P28324 431 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 OXTRP30559 389 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 ARL2P36404 184 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 OPRL1P41146 370 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 SF3B4Q15427 424 aaKnown RBP eCLIP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 CERCAMQ5T4B2 595 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 FAM117BQ6P1L5 589 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 ABHD15Q6UXT9 468 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 FAM35AQ86V20 835 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 VSIG10LQ86VR7 867 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 SCAIQ8N9R8 606 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 KHSRPQ92945 711 aaKnown RBP eCLIP13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 FANCEQ9HB96 536 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 RIC8BQ9NVN3 520 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 GNPTGQ9UJJ9 305 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 MGAMO43451 1857 aa13.6□□□□□ -0.23
CCDC88C-201ENST00000331194 A0A0A0MRY4 1105 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CXCL8P10145 99 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CCNA2P20248 432 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 MAGEA12P43365 314 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 PRKAA1Q13131 559 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 LTBP1Q14766 1721 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CNSTQ6PJW8 725 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 FSTL5Q8N475 847 aaPredicted RBP13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 CCDC185Q8N715 623 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 ADAMTS16Q8TE57 1224 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 STARD8Q92502 1023 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 SPATA13Q96N96 652 aa13.59□□□□□ -0.23
CCDC88C-201ENST00000331194 QKIQ96PU8 341 aaKnown RBP eCLIP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms