RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 DEPDC1Q5TB30 811 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 LCN8Q6JVE9 175 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PRR23BQ6ZRT6 265 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SPRED1Q7Z699 444 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 KCNMB4Q86W47 210 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 TNS4Q8IZW8 715 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PCDH20Q8N6Y1 951 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 SEPT1Q8WYJ6 367 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CENPIQ92674 756 aaPredicted RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ACO2Q99798 780 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ELOVL4Q9GZR5 314 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 GPATCH2LQ9NWQ4 482 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 GMIPQ9P107 970 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ACTR3BQ9P1U1 418 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 ZNF70Q9UC06 446 aaPredicted RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 VANGL2Q9ULK5 521 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 CDC14AQ9UNH5 594 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 PCDHGA7Q9Y5G6 932 aa4.84□□□□□ -1.64
PTPN13-201ENST00000316707 COL14A1Q05707 1796 aaKnown RBP4.84□□□□□ -1.64
PTPN13-201ENST00000316707 VPS4BO75351 444 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 MICAL2O94851 1124 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 AP2A1O95782 977 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TCN1P20061 433 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 CCR3P51677 355 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SLC10A2Q12908 348 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PEX6Q13608 980 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 LRP8Q14114 963 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PRPSAP1Q14558 356 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 AGKQ53H12 422 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZNF618Q5T7W0 954 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TAF2Q6P1X5 1199 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 FLAD1Q8NFF5 587 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PTCD2Q8WV60 388 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ARNTL2Q8WYA1 636 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 P2RY11Q96G91 374 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PRMT6Q96LA8 375 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ACAD9Q9H845 621 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 AGPAT4Q9NRZ5 378 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TSPAN16Q9UKR8 245 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZCWPW2A0A1B0GU75 182 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 GMNNO75496 209 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TRAF2Q12933 501 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ATP1A4Q13733 1029 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SHROOM1Q2M3G4 852 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 RFX4Q33E94 735 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SLC36A3Q495N2 470 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ATF7IP2Q5U623 682 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 GPR107Q5VW38 600 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 AADATQ8N5Z0 425 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 NEURL2Q9BR09 285 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 NPLQ9BXD5 320 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TEX13BQ9BXU2 312 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SEMA6AQ9H2E6 1030 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 EPS8L2Q9H6S3 715 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TRNAU1APQ9NX07 287 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 DUS2Q9NX74 493 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 WARS2Q9UGM6 360 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 GIT1Q9Y2X7 761 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 GRXCR2A6NFK2 248 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TRIM24O15164 1050 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PFDN6O15212 129 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TGFB3P10600 412 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TFE3P19532 575 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 EEF1B2P24534 225 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SERPINB1P30740 379 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 NEK2P51955 445 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 HNRNPFP52597 415 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TARBP2Q15633 366 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 C15orf59Q2T9L4 293 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PPM1LQ5SGD2 360 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ARHGAP17Q68EM7 881 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TFAP2DQ7Z6R9 452 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZBTB33Q86T24 672 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZCCHC7Q8N3Z6 543 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 MINDY1Q8N5J2 469 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 PIK3C3Q8NEB9 887 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZNF641Q96N77 438 aaPredicted RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 FZD8Q9H461 694 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 CPNE5Q9HCH3 593 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TRPV5Q9NQA5 729 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 XPR1Q9UBH6 696 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 CYTH4Q9UIA0 394 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 DLX3O60479 287 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 RASAL1O95294 804 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ERVK-10P10266 1014 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 HCAR3P49019 387 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SLC26A2P50443 739 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SP4Q02446 784 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ZNF33AQ06730 810 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TNK2Q07912 1038 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 BNIP3Q12983 259 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ITGADQ13349 1161 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 THOC7Q6I9Y2 204 aaKnown RBP4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SHKBP1Q8TBC3 707 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 CANT1Q8WVQ1 401 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 ACDQ96AP0 544 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 TAMM41Q96BW9 452 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 VMP1Q96GC9 406 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 CTRCQ99895 268 aa4.83□□□□□ -1.64
PTPN13-201ENST00000316707 SMOXQ9NWM0 555 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms