RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TPM3P06753 285 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ADRB3P13945 408 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 IL1R2P27930 398 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 HTR7P34969 479 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ABL2P42684 1182 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 NXPH1P58417 271 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 YBEYP58557 167 aaPredicted RBP16.57■□□□□ 0.24
LSM1-201ENST00000311351 RHOAP61586 193 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 SNRPD1P62314 119 aaKnown RBP16.57■□□□□ 0.24
LSM1-201ENST00000311351 SHC2P98077 582 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 TRIP6Q15654 476 aaKnown RBP16.57■□□□□ 0.24
LSM1-201ENST00000311351 SEL1L3Q68CR1 1132 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 RFX8Q6ZV50 586 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 NPWQ8N729 165 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 EXOC2Q96KP1 924 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 NUP85Q9BW27 656 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 LHX3Q9UBR4 397 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ANAPC7Q9UJX3 599 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ZFR2Q9UPR6 939 aaKnown RBP16.57■□□□□ 0.24
LSM1-201ENST00000311351 WASF3Q9UPY6 502 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 DMTF1Q9Y222 760 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 ITM2BQ9Y287 266 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 PCDHGB2Q9Y5G2 931 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 AKAP13Q12802 2813 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 SPEGQ15772 3267 aa16.57■□□□□ 0.24
LSM1-201ENST00000311351 IGF2RP11717 2491 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 A0A1B0GTQ1 180 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 EIF3CLB5ME19 914 aaKnown RBP16.56■□□□□ 0.24
LSM1-201ENST00000311351 J3KR12 359 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 HAX1O00165 279 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 SLC31A1O15431 190 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 FLRT2O43155 660 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 ERCC2P18074 760 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 SHBQ15464 509 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 ZNF284Q2VY69 593 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 CCDC122Q5T0U0 273 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 TXNRD3NBQ6F5E7 133 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 ALKBH5Q6P6C2 394 aaKnown RBP16.56■□□□□ 0.24
LSM1-201ENST00000311351 FBXL19Q6PCT2 694 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 HORMAD1Q86X24 394 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 PLPP6Q8IY26 295 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 BAHD1Q8TBE0 780 aaPredicted RBP16.56■□□□□ 0.24
LSM1-201ENST00000311351 GDAP1L1Q96MZ0 367 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 ELF4Q99607 663 aaPredicted RBP16.56■□□□□ 0.24
LSM1-201ENST00000311351 EIF3CQ99613 913 aaKnown RBP16.56■□□□□ 0.24
LSM1-201ENST00000311351 ZWILCHQ9H900 591 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 PDFQ9HBH1 243 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 GDF3Q9NR23 364 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 GGT7Q9UJ14 662 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 NENFQ9UMX5 172 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 MFHAS1Q9Y4C4 1052 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 PCDHB9Q9Y5E1 797 aa16.56■□□□□ 0.24
LSM1-201ENST00000311351 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.56■□□□□ 0.24
LSM1-201ENST00000311351 C16orf96A6NNT2 1141 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 PRAMEF26H0Y7S4 382 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 TLR4O00206 839 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SPINT1O43278 529 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 DAPK3O43293 454 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 CBFA2T2O43439 604 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 HYAL3O43820 417 aaPredicted RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 IGSF6O95976 241 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 CYP1A2P05177 515 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 PCK1P35558 622 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 NUDT1P36639 197 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 EIF4A3P38919 411 aaKnown RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 PAPOLAP51003 745 aaKnown RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 NDST2P52849 883 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 CCDC15Q0P6D6 951 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 MYLK3Q32MK0 819 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 TMEM259Q4ZIN3 620 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SLC45A4Q5BKX6 768 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 ZNF805Q5CZA5 627 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 LRRC73Q5JTD7 316 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SPECC1LQ69YQ0 1117 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 DBX2Q6ZNG2 339 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SPATS2Q86XZ4 545 aaKnown RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 GATAD2AQ86YP4 633 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 PSTKQ8IV42 348 aaKnown RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 ARHGAP12Q8IWW6 846 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 MFSD2AQ8NA29 543 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 TMEM145Q8NBT3 493 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 HSPH1Q92598 858 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SKA1Q96BD8 255 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 KLHL32Q96NJ5 620 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 SLC39A8Q9C0K1 460 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.55■□□□□ 0.24
LSM1-201ENST00000311351 CWC15Q9P013 229 aaKnown RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 UBA2Q9UBT2 640 aaPredicted RBP16.55■□□□□ 0.24
LSM1-201ENST00000311351 FADS3Q9Y5Q0 445 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 USP24Q9UPU5 2620 aa16.55■□□□□ 0.24
LSM1-201ENST00000311351 LRRK1Q38SD2 2015 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 INSIG1O15503 277 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 PCDHGA12O60330 932 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 PRAMEF11O60813 436 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 POP4O95707 220 aaKnown RBP16.54■□□□□ 0.24
LSM1-201ENST00000311351 FTH1P19P0C7X4 201 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 HNRNPH3P31942 346 aaKnown RBP16.54■□□□□ 0.24
LSM1-201ENST00000311351 CLDN2P57739 230 aa16.54■□□□□ 0.24
LSM1-201ENST00000311351 HNRNPDQ14103 355 aaKnown RBP16.54■□□□□ 0.24
LSM1-201ENST00000311351 DPYSQ14117 519 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms