RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 EID2Q8N6I1 236 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 CCDC185Q8N715 623 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 C3orf20Q8ND61 904 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 FAM172AQ8WUF8 416 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 KLK6Q92876 244 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 ARHGEF2Q92974 986 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 NTAN1Q96AB6 310 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 VOPP1Q96AW1 172 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 ISG20Q96AZ6 181 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 KLHDC7BQ96G42 594 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 PPP1R16AQ96I34 528 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 CNDP2Q96KP4 475 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 AGPAT1Q99943 283 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 MAGEH1Q9H213 219 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 CCDC86Q9H6F5 360 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 TMEM248Q9NWD8 314 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 HECAQ9UBI9 543 aaPredicted RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 DNAI1Q9UI46 699 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 RALYQ9UKM9 306 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 ZFR2Q9UPR6 939 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 FCF1Q9Y324 198 aaKnown RBP9.91□□□□□ -0.82
VPS41-201ENST00000265745 PCDHGA1Q9Y5H4 931 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 PKD1L2Q7Z442 2459 aa9.91□□□□□ -0.82
VPS41-201ENST00000265745 FREM2Q5SZK8 3169 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 ZFYVE26Q68DK2 2539 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 ADAMTS9Q9P2N4 1935 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 DMXL2Q8TDJ6 3036 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 FAM149AA5PLN7 773 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 TRABD2BA6NFA1 517 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 PCDH8O95206 1070 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 F12P00748 615 aaPredicted RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 THEGLP0DJG4 465 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 CDK4P11802 303 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 ATP1A3P13637 1013 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 ADRB3P13945 408 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 GPD1P21695 349 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 HNRNPA2B1P22626 353 aaKnown RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 ITGB7P26010 798 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 AKT2P31751 481 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 L1CAMP32004 1257 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 CCNHP51946 323 aaPredicted RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 NEK3P51956 506 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 ZNF143P52747 638 aaPredicted RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 RPL7AP62424 266 aaKnown RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 DNAJC3Q13217 504 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 CCDC183Q5T5S1 534 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 SEL1L3Q68CR1 1132 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 FBXL19Q6PCT2 694 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 IRF2BP2Q7Z5L9 587 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 SLFN11Q7Z7L1 901 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 TMPRSS12Q86WS5 348 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 PYROXD2Q8N2H3 581 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 SLC25A45Q8N413 288 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 MDM1Q8TC05 714 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 TBC1D31Q96DN5 1066 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 FEM1CQ96JP0 617 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 MYOCQ99972 504 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 SELENOOQ9BVL4 669 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 SLC17A9Q9BYT1 436 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 NOL6Q9H6R4 1146 aaKnown RBP9.9□□□□□ -0.82
VPS41-201ENST00000265745 KLHL11Q9NVR0 708 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 DKK4Q9UBT3 224 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 HPCAL4Q9UM19 191 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 FADS3Q9Y5Q0 445 aa9.9□□□□□ -0.82
VPS41-201ENST00000265745 C16orf96A6NNT2 1141 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 TRIM38O00635 465 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 KDELR3O43731 214 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 AP1G1O43747 822 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 RAMP2O60895 175 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 RFPL3O75679 317 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 POP4O95707 220 aaKnown RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 MBD3O95983 291 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 PAK4O96013 591 aaPredicted RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 CCDC172P0C7W6 258 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 CKMT2P17540 419 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 GKP32189 559 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 ACADVLP49748 655 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 GEMIN4P57678 1058 aaKnown RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 CLDN2P57739 230 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 RPS21P63220 83 aaKnown RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 TYRO3Q06418 890 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 FGL2Q14314 439 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 POLD3Q15054 466 aaPredicted RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 MYLK3Q32MK0 819 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 ZNF805Q5CZA5 627 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 ACAD10Q6JQN1 1059 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 ABI3BPQ7Z7G0 1075 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 MCOLN2Q8IZK6 566 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 OR13H1Q8NG92 308 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 OR2AP1Q8NGE2 309 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 LRIG1Q96JA1 1093 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 BMFQ96LC9 184 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 CNPY3Q9BT09 278 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 SYT11Q9BT88 431 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 TM6SF2Q9BZW4 377 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 FZD3Q9NPG1 666 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 SEPT11Q9NVA2 429 aaKnown RBP9.89□□□□□ -0.83
VPS41-201ENST00000265745 MAP10Q9P2G4 905 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 HS3ST3A1Q9Y663 406 aa9.89□□□□□ -0.83
VPS41-201ENST00000265745 CEP192Q8TEP8 1941 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms