RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 UBAP1Q9NZ09 502 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 ATXN10Q9UBB4 475 aa12.81□□□□□ -0.36
LIG1-201ENST00000263274 FNDC3AQ9Y2H6 1198 aaKnown RBP12.81□□□□□ -0.36
LIG1-201ENST00000263274 TMEM114B3SHH9 223 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 SUPT7LO94864 414 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 HNRNPCP07910 306 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIG1-201ENST00000263274 CYP2B6P20813 491 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 NPY2RP49146 381 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 TAS2R39P59534 338 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 ADGRG6Q86SQ4 1221 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 SENP8Q96LD8 212 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 COLEC11Q9BWP8 271 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 DRC3Q9H069 523 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 COPG1Q9Y678 874 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 CXCL11O14625 94 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 DCLK1O15075 740 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 CABYRO75952 493 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 BDNFP23560 247 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 CASP2P42575 452 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 MAGEA8P43361 318 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 IL23RQ5VWK5 629 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 FASTKD5Q7L8L6 764 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 ZC3HC1Q86WB0 502 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 CEP97Q8IW35 865 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 MYO1HQ8N1T3 1032 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 GAD1Q99259 594 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 CCT7Q99832 543 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 C11orf84Q9BUA3 381 aaPredicted RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 GBA3Q9H227 469 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 RHOJQ9H4E5 214 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 ARHGEF38Q9NXL2 777 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 C6orf203Q9P0P8 240 aaPredicted RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 BLOC1S6Q9UL45 172 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 PPP2R3BQ9Y5P8 575 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 COMMD3-BMI1R4GMX3 469 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 RLFQ13129 1914 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 I6L893 689 aaPredicted RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 AURKAO14965 403 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 TREHO43280 583 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 GRID2O43424 1007 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 AKAP10O43572 662 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 STAU1O95793 577 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 FAM58BPP0C7Q3 252 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 MAXP61244 160 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 PSME3P61289 254 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 PAFAH1B3Q15102 231 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 METTL21CQ5VZV1 264 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 ZYG11AQ6WRX3 759 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 TRIM67Q6ZTA4 783 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 PPHLN1Q8NEY8 458 aaKnown RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 RBM22Q9NW64 420 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIG1-201ENST00000263274 NCKIPSDQ9NZQ3 722 aa12.8□□□□□ -0.36
LIG1-201ENST00000263274 RCOR3Q9P2K3 495 aaPredicted RBP12.8□□□□□ -0.36
LIG1-201ENST00000263274 PIRO00625 290 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 SMIM10L2AP0DMW4 78 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 SMIM10L2BP0DMW5 78 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 DARSP14868 501 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 PSMC3P17980 439 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 PNPLA4P41247 253 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 RPL5P46777 297 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 CDH13P55290 713 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 BEX3Q00994 111 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 DPYSQ14117 519 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 ADGRE1Q14246 886 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 PPP1R3AQ16821 1122 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 FBXO48Q5FWF7 155 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 OTUD1Q5VV17 481 aaPredicted RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 CLEC6AQ6EIG7 209 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 LCA5Q86VQ0 697 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 LILRA2Q8N149 483 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 GPC2Q8N158 579 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 ARRDC4Q8NCT1 418 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 OR9I1Q8NGQ6 314 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 LRTOMTQ8WZ04 291 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 PCED1BQ96HM7 432 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 HNRNPABQ99729 332 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 CIB1Q99828 191 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 CASS4Q9NQ75 786 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 DOCK1Q14185 1865 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 SHROOM3Q8TF72 1996 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 TTC24A2A3L6 582 aaPredicted RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 APOA4P06727 396 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 MMP3P08254 477 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 SLC35E2BP0CK96 405 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 GLDCP23378 1020 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 DPP6P42658 865 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 AFF1P51825 1210 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 CSE1LP55060 971 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 RAB10P61026 200 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 HNRNPDQ14103 355 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 FASTKQ14296 549 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 RPS6KA2Q15349 733 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 FAM83EQ2M2I3 478 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 UGT2A3Q6UWM9 527 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 RBM12BQ8IXT5 1001 aaKnown RBP12.79□□□□□ -0.36
LIG1-201ENST00000263274 HEXDCQ8WVB3 486 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 HDAC11Q96DB2 347 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 TEKT5Q96M29 485 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 MPP6Q9NZW5 540 aa12.79□□□□□ -0.36
LIG1-201ENST00000263274 SFMBT1Q9UHJ3 866 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms