RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 IL27RAQ6UWB1 636 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PRR23CQ6ZRP0 262 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 BRSK2Q8IWQ3 736 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PCYOX1LQ8NBM8 494 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 OR4C15Q8NGM1 316 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 NANPQ8TBE9 248 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TMA16Q96EY4 203 aaKnown RBP2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TBATAQ96M53 351 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 C1QTNF1Q9BXJ1 281 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 RMND5AQ9H871 391 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 SERINC1Q9NRX5 453 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHA13Q9Y5I0 950 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 ZHX2Q9Y6X8 837 aa2.82□□□□□ -1.96
SCN1A-219ENST00000641575 TANC2Q9HCD6 1990 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ANKDD1BA6NHY2 528 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RPS6KA4O75676 772 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CLTBP09497 229 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NR2F1P10589 423 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PRKAR2AP13861 404 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 IFNAR1P17181 557 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RPS6KB1P23443 525 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FASTKD3Q14CZ7 662 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF800Q2TB10 664 aaPredicted RBP eCLIP2.81□□□□□ -1.963e-6■■■□□ 18.5
SCN1A-219ENST00000641575 C8orf34Q49A92 452 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 OLFML2AQ68BL7 652 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PAGE2Q7Z2X7 111 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 COL23A1Q86Y22 540 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LEMD2Q8NC56 503 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EDC3Q96F86 508 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CLIC6Q96NY7 704 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MMADHCQ9H3L0 296 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RNF121Q9H920 327 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GBA2Q9HCG7 927 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UBP1Q9NZI7 540 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF224Q9NZL3 707 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FGD5Q6ZNL6 1462 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SBNO2Q9Y2G9 1366 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SYNJ2BP-COX16A0A087WUM0 186 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PHGDHO43175 533 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PAPSS2O95340 614 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FGBP02675 491 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DLATP10515 647 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RAB9AP51151 201 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RAB25P57735 213 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DYNLT1P63172 113 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NEDD8Q15843 81 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 MOGQ16653 247 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TYSND1Q2T9J0 566 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 VWA2Q5GFL6 755 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 STRIP1Q5VSL9 837 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FAM180BQ6P0A1 224 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FBXL19Q6PCT2 694 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EIF3MQ7L2H7 374 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 YTHDF3Q7Z739 585 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB38Q8NAP3 1195 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CLEC1AQ8NC01 280 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SMG7Q92540 1137 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SIPA1Q96FS4 1042 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NSMCE3Q96MG7 304 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SLC30A2Q9BRI3 323 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 OSBPL8Q9BZF1 889 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 WDR12Q9GZL7 423 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SLC6A15Q9H2J7 730 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 COX16Q9P0S2 106 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 B4GALT7Q9UBV7 327 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 KLF15Q9UIH9 416 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ANGPT4Q9Y264 503 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 DNMT3AQ9Y6K1 912 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 A0A0X1KG70 313 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 UBE2QL1A1L167 161 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SRGAP2O75044 1071 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF44P15621 663 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EIF4BP23588 611 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 GALK2Q01415 458 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 SULT2A1Q06520 285 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ILF3Q12906 894 aaKnown RBP eCLIP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF177Q13360 481 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TDGQ13569 410 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 QPRTQ15274 297 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 HSDL1Q3SXM5 330 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ALG10Q5BKT4 473 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FAM47AQ5JRC9 791 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 EOGTQ5NDL2 527 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 LRIF1Q5T3J3 769 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF57Q68EA5 555 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 P3H2Q8IVL5 708 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CHPFQ8IZ52 775 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RIBC1Q8N443 379 aaPredicted RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 TOR1AIP2Q8NFQ8 470 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 CHAC2Q8WUX2 184 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PFDN5Q99471 154 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 AP1M1Q9BXS5 423 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 METTL8Q9H825 291 aaKnown RBP2.81□□□□□ -1.96
SCN1A-219ENST00000641575 PCDH18Q9HCL0 1135 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 NUP50Q9UKX7 468 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 FLT4P35916 1363 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 ARHGAP21Q5T5U3 1957 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 RBAK-RBAKDNI3L0D1 243 aa2.81□□□□□ -1.96
SCN1A-219ENST00000641575 APODP05090 189 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms