RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ALPPL2P10696 532 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 PRLRP16471 622 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 GLDCP23378 1020 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 DGKAP23743 735 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 PTPN9P43378 593 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 GSCP56915 257 aaPredicted RBP18.78■□□□□ 0.6
CLN3-241ENST00000635861 ARF5P84085 180 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 MANEALQ5VSG8 457 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 HNRNPLLQ8WVV9 542 aaKnown RBP18.78■□□□□ 0.6
CLN3-241ENST00000635861 RAB7BQ96AH8 199 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 FEM1CQ96JP0 617 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 TNKS2Q9H2K2 1166 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 EVA1BQ9NVM1 165 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 OR12D3Q9UGF7 316 aa18.78■□□□□ 0.6
CLN3-241ENST00000635861 ZFR2Q9UPR6 939 aaKnown RBP18.78■□□□□ 0.6
CLN3-241ENST00000635861 NEMP2A6NFY4 417 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 ADRB3P13945 408 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 RHOQP17081 205 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 ADRA1BP35368 520 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 CCNHP51946 323 aaPredicted RBP18.77■□□□□ 0.6
CLN3-241ENST00000635861 ATP11AP98196 1134 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 TARDBPQ13148 414 aaKnown RBP eCLIP18.77■□□□□ 0.6
CLN3-241ENST00000635861 C2CD6Q53TS8 623 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 KYAT3Q6YP21 454 aaKnown RBP18.77■□□□□ 0.6
CLN3-241ENST00000635861 GCNT7Q6ZNI0 430 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 SLC25A45Q8N413 288 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 MAGEH1Q9H213 219 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 USP29Q9HBJ7 922 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 GPR27Q9NS67 375 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 TMEM248Q9NWD8 314 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 HPCAL4Q9UM19 191 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 CA5BQ9Y2D0 317 aa18.77■□□□□ 0.6
CLN3-241ENST00000635861 PTPRQQ9UMZ3 2332 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 SIGLEC6O43699 453 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 SDC3O75056 442 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 PIAS2O75928 621 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 HOXB3P14651 431 aaPredicted RBP18.76■□□□□ 0.59
CLN3-241ENST00000635861 SOX5P35711 763 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 JAM2P57087 298 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 DAB2P98082 770 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 FMO1Q01740 532 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 ACAP1Q15027 740 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 FKBP15Q5T1M5 1219 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 CDKAL1Q5VV42 579 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 DRC7Q8IY82 874 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 DCBLD1Q8N8Z6 715 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 OR13H1Q8NG92 308 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 RXFP2Q8WXD0 754 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 ASB12Q8WXK4 309 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 ARHGEF26Q96DR7 871 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 DUSP23Q9BVJ7 150 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 CALN1Q9BXU9 219 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 SLC17A9Q9BYT1 436 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 TAB2Q9NYJ8 693 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 NLGN3Q9NZ94 848 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 CLCA2Q9UQC9 943 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 FADS3Q9Y5Q0 445 aa18.76■□□□□ 0.59
CLN3-241ENST00000635861 SMG1Q96Q15 3661 aaKnown RBP18.76■□□□□ 0.59
CLN3-241ENST00000635861 ZSCAN5CA6NGD5 496 aaPredicted RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 C2CD4BA6NLJ0 364 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 TSPAN6O43657 245 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 GFPT2O94808 682 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 GP1BAP07359 652 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 ABCG1P45844 678 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 HNRNPKP61978 463 aaKnown RBP eCLIP18.75■□□□□ 0.59
CLN3-241ENST00000635861 COL9A2Q14055 689 aaPredicted RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 POLD3Q15054 466 aaPredicted RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 CCDC14Q49A88 953 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 NLRP14Q86W24 1093 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 EMC1Q8N766 993 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 DENND6BQ8NEG7 585 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 CENPIQ92674 756 aaPredicted RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 KLK6Q92876 244 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 ARHGEF2Q92974 986 aaKnown RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 NTAN1Q96AB6 310 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 LENG8Q96PV6 779 aaPredicted RBP18.75■□□□□ 0.59
CLN3-241ENST00000635861 MYOCQ99972 504 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 OSBPL1AQ9BXW6 950 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 ASXL3Q9C0F0 2248 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 LRRK1Q38SD2 2015 aa18.75■□□□□ 0.59
CLN3-241ENST00000635861 RNF103O00237 685 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 TRIM38O00635 465 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 CD160O95971 181 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 GSRP00390 522 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 CKMT1AP12532 417 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 UNGP13051 313 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 PTMSP20962 102 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 STAT1P42224 750 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 RABIFP47224 123 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 DUSP3P51452 185 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 DNA2P51530 1060 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 POLR2FP61218 127 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 SNRPD1P62314 119 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 INSM1Q01101 510 aaPredicted RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 CDO1Q16878 200 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 SEL1L3Q68CR1 1132 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 Q6ZSR6 202 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 PARS2Q7L3T8 475 aaKnown RBP18.74■□□□□ 0.59
CLN3-241ENST00000635861 SLC22A18ASQ8N1D0 253 aa18.74■□□□□ 0.59
CLN3-241ENST00000635861 FAM181AQ8N9Y4 354 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms