RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 ZNF786Q8N393 782 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TMEM102Q8N9M5 508 aaPredicted RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM47BQ8NA70 645 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 LHFPL5Q8TAF8 219 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TMEM143Q96AN5 459 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TOE1Q96GM8 510 aaKnown RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 TUBA1CQ9BQE3 449 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TMEM121Q9BTD3 319 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ZSCAN5AQ9BUG6 496 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 CHID1Q9BWS9 393 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 VRTNQ9H8Y1 702 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 FER1L6Q2WGJ9 1857 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TYW5A2RUC4 315 aaKnown RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 C12orf71A8MTZ7 269 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM155AB1AL88 458 aaPredicted RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM25AB3EWG3 89 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM25CB3EWG5 89 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM25GB3EWG6 89 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 FZD9O00144 591 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 NDUFA2O43678 99 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 NDUFS2O75306 463 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TOMM70O94826 608 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TNFAIP3P21580 790 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 CD9P21926 228 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 COMTP21964 271 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 RPL10P27635 214 aaKnown RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 CENPAP49450 140 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 PRKAA2P54646 552 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 GPLD1P80108 840 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TRPC3Q13507 836 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 LAPTM5Q13571 262 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 IKBKEQ14164 716 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 MAPRE2Q15555 327 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 EFHC2Q5JST6 749 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 VSIG10LQ86VR7 867 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 CLYBLQ8N0X4 340 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 XXYLT1Q8NBI6 393 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 DHX38Q92620 1227 aaKnown RBP10.37□□□□□ -0.75
VPS39-214ENST00000614932 FAM111AQ96PZ2 611 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 VPS33BQ9H267 617 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ADNPQ9H2P0 1102 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 COQ10BQ9H8M1 238 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 KMT5AQ9NQR1 393 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 ZNF221Q9UK13 617 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 RIMKLBQ9ULI2 386 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 PCDHA10Q9Y5I2 948 aa10.37□□□□□ -0.75
VPS39-214ENST00000614932 TRIM64A6NGJ6 449 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 ADM5C9JUS6 153 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 FSCN2O14926 492 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 RNASEH2AO75792 299 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 KCNH1O95259 989 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PCNAP12004 261 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 BTF3P20290 206 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 GSTM2P28161 218 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 RBL1P28749 1068 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CCND2P30279 289 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 ETV1P50549 477 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 BLVRAP53004 296 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 POLR2GP62487 172 aaKnown RBP eCLIP10.36□□□□□ -0.75
VPS39-214ENST00000614932 PRAMEP78395 509 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 TMPRSS15P98073 1019 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CLCQ05315 142 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 TARDBPQ13148 414 aaKnown RBP eCLIP10.36□□□□□ -0.75
VPS39-214ENST00000614932 FLOT2Q14254 428 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 NFE2L1Q14494 772 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PPP2R5DQ14738 602 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 C1orf220Q5T0J3 134 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CPNE8Q86YQ8 564 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CARNMT1Q8N4J0 409 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 LEMD2Q8NC56 503 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 GALNT11Q8NCW6 608 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 POMGNT1Q8WZA1 660 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 SEMA4DQ92854 862 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CMTM5Q96DZ9 223 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 KLF6Q99612 283 aaPredicted RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 STRA6Q9BX79 667 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 GON7Q9BXV9 100 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 GPN2Q9H9Y4 310 aaPredicted RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 TIGARQ9NQ88 270 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CHST7Q9NS84 486 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PKD2L2Q9NZM6 624 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CNTN3Q9P232 1028 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PLOD2O00469 737 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 SGPL1O95470 568 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 UGT2B4P06133 528 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 KITP10721 976 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PTPN1P18031 435 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 RPS12P25398 132 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 DSG3P32926 999 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 LEPRP48357 1165 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 SNRNP35Q16560 246 aaKnown RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 AASDHQ4L235 1098 aaPredicted RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 C2CD6Q53TS8 623 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 FAM171BQ6P995 826 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 CRLF3Q8IUI8 442 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.36□□□□□ -0.75
VPS39-214ENST00000614932 OLIG1Q8TAK6 271 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 FNIP1Q8TF40 1166 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 PIK3R3Q92569 461 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 DLG3Q92796 817 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms