RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CHMP2BQ9UQN3 213 aa14.5□□□□□ -0.09
USP39-220ENST00000613444 COLQQ9Y215 455 aaPredicted RBP14.5□□□□□ -0.09
USP39-220ENST00000613444 TTC24A2A3L6 582 aaPredicted RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 GJB3O75712 270 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 HLA-FP30511 346 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 DSC2Q02487 901 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 RFTN1Q14699 578 aaPredicted RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 OR52K1Q8NGK4 314 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 OSCP1Q8WVF1 389 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 LRRC39Q96DD0 335 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 MSLNLQ96KJ4 702 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 MRGPRX2Q96LB1 330 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 BBS2Q9BXC9 721 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 KIAA1522Q9P206 1035 aaPredicted RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 CDH7Q9ULB5 785 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 PRUNE2Q8WUY3 3088 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 NEDD8-MDP1E9PL57 170 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 SLC9A3R1O14745 358 aaPredicted RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 PSMD3O43242 534 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 TYRP14679 529 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 CR2P20023 1033 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 SSTR1P30872 391 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 RGRP47804 291 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 EIF3BP55884 814 aaKnown RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 EML3Q32P44 896 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 DNAJC21Q5F1R6 531 aaKnown RBP14.49□□□□□ -0.09
USP39-220ENST00000613444 ATAT1Q5SQI0 421 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 DENND5AQ6IQ26 1287 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 LINGO4Q6UY18 593 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 BPIFB1Q8TDL5 484 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 NSMCE3Q96MG7 304 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 PPP1R2P1Q96PQ5 205 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 TMEM109Q9BVC6 243 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 OBP2AQ9NY56 170 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 SEPT3Q9UH03 358 aa14.49□□□□□ -0.09
USP39-220ENST00000613444 COL4A3Q01955 1670 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 NEBLO76041 1014 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 GEMP55040 296 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 SKOR1P84550 965 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 MPP3Q13368 585 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 ZNF235Q14590 738 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 PLEKHG6Q3KR16 790 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 INO80DQ53TQ3 878 aaPredicted RBP14.48□□□□□ -0.09
USP39-220ENST00000613444 CEP85LQ5SZL2 805 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 TRIM68Q6AZZ1 485 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 ATP11CQ8NB49 1132 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 MYADMQ96S97 322 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 EBNA1BP2Q99848 306 aaKnown RBP14.48□□□□□ -0.09
USP39-220ENST00000613444 APOL2Q9BQE5 337 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 TRIM56Q9BRZ2 755 aaKnown RBP14.48□□□□□ -0.09
USP39-220ENST00000613444 POLR1EQ9GZS1 481 aaKnown RBP14.48□□□□□ -0.09
USP39-220ENST00000613444 VPS45Q9NRW7 570 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 DUS2Q9NX74 493 aaKnown RBP14.48□□□□□ -0.09
USP39-220ENST00000613444 CLDND1Q9NY35 253 aa14.48□□□□□ -0.09
USP39-220ENST00000613444 GOLGA6CA6NDK9 693 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 HEPACAM2A8MVW5 462 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 PMPCBO75439 489 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 MT-CO1P00395 513 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 AGTP01019 485 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 CYP17A1P05093 508 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 GOLGA6DP0CG33 693 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 TSHRP16473 764 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 MGAT1P26572 445 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 CD86P42081 329 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 CRADDP78560 199 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 SLC12A1Q13621 1099 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 DHCR24Q15392 516 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 TANGO2Q6ICL3 276 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 NAPEPLDQ6IQ20 393 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 RANBP10Q6VN20 620 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 ST13P5Q8NFI4 369 aaPredicted RBP14.47□□□□□ -0.09
USP39-220ENST00000613444 IPMKQ8NFU5 416 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 ACDQ96AP0 544 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 ARL8AQ96BM9 186 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 SEMA3CQ99985 751 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 MED4Q9NPJ6 270 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 ABCB8Q9NUT2 735 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 GOLGA6AQ9NYA3 693 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 FBXO10Q9UK96 956 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 BPTFQ12830 3046 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 SDR42E2A6NKP2 422 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 TCEA3O75764 348 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 TMCC1O94876 653 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 C1QAP02745 245 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 WNT3AP56704 352 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 SESN2P58004 480 aaPredicted RBP14.47□□□□□ -0.09
USP39-220ENST00000613444 ITKQ08881 620 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 FUT11Q495W5 492 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 CES5AQ6NT32 575 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 CAPN12Q6ZSI9 719 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 C3orf62Q6ZUJ4 267 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 KIAA0907Q7Z7F0 614 aaPredicted RBP14.47□□□□□ -0.09
USP39-220ENST00000613444 RUFY1Q96T51 708 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 TBL1YQ9BQ87 522 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 FAM83CQ9BQN1 747 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 C2orf49Q9BVC5 232 aaPredicted RBP14.47□□□□□ -0.09
USP39-220ENST00000613444 SYBUQ9NX95 663 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 LHX3Q9UBR4 397 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 KIAA1549LQ6ZVL6 1849 aa14.47□□□□□ -0.09
USP39-220ENST00000613444 A0A087WUV0 522 aaPredicted RBP14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms