RNA–Protein interactions for RNA: ENST00000601373.5

IRF3-229, Transcript of interferon regulatory factor 3, human

TSL 2

Gene IRF3, Length 680 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-229	ENST00000601373	KLHL38	Q2WGJ6	581 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	RNF43	Q68DV7	783 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	TMC5	Q6UXY8	1006 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	CYS1	Q717R9	158 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	MFN1	Q8IWA4	741 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	CELF5	Q8N6W0	485 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	C12orf76	Q8N812	135 aa	Predicted RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	TTC16	Q8NEE8	873 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	VN1R2	Q8NFZ6	395 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	FIBIN	Q8TAL6	211 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	ARL8A	Q96BM9	186 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	STAMBPL1	Q96FJ0	436 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	IMP4	Q96G21	291 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	POLR1E	Q9GZS1	481 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	SMG9	Q9H0W8	520 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	ZC3H7B	Q9UGR2	993 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	SLC24A2	Q9UI40	661 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	TTLL3	Q9Y4R7	772 aa		13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	HELZ	P42694	1942 aa	Known RBP	13.93	□□□□□ -0.18
IRF3-229	ENST00000601373	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CXorf51A	A0A1B0GTR3	108 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	RGS16	O15492	202 aa	Predicted RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CDH16	O75309	829 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	ATP5D	P30049	168 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	SSTR1	P30872	391 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	STX2	P32856	288 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	GEMIN4	P57678	1058 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	SPARCL1	Q14515	664 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	SLC14A2	Q15849	920 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	UBAP2	Q5T6F2	1119 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	FYB2	Q5VWT5	728 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	GPR149	Q86SP6	731 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	TDRP	Q86YL5	185 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	IGDCC3	Q8IVU1	814 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CNPY4	Q8N129	248 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	EFHB	Q8N7U6	833 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	DNAAF3	Q8N9W5	541 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	OR52K2	Q8NGK3	314 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	OXNAD1	Q96HP4	312 aa	Predicted RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CYTH2	Q99418	400 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	TBL1Y	Q9BQ87	522 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	WDR83	Q9BRX9	315 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	FEM1A	Q9BSK4	669 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CENPH	Q9H3R5	247 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	IGFLR1	Q9H665	355 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	ACSS3	Q9H6R3	686 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	CCL26	Q9Y258	94 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	MAD1L1	Q9Y6D9	718 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	TCF20	Q9UGU0	1960 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	TRANK1	O15050	2925 aa		13.92	□□□□□ -0.18
IRF3-229	ENST00000601373	EXOC1L	A0A1B0GW35	172 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	CBX4	O00257	560 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	RFXAP	O00287	272 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	SCAMP3	O14828	347 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	AGT	P01019	485 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	HOXB8	P17481	243 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	PGAM1	P18669	254 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	FSHR	P23945	695 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	MGAT1	P26572	445 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	PLK1	P53350	603 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	SESN2	P58004	480 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	INO80D	Q53TQ3	878 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	TTMP	Q5BVD1	217 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	RARS2	Q5T160	578 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ALG1L	Q6GMV1	187 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	RETSAT	Q6NUM9	610 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ANKRD54	Q6NXT1	300 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	CASC4	Q6P4E1	433 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	TPGS1	Q6ZTW0	290 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	METTL3	Q86U44	580 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	DCAF4L2	Q8NA75	395 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	IPMK	Q8NFU5	416 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	OR52K1	Q8NGK4	314 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	SPATA22	Q8NHS9	363 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	GSDMB	Q8TAX9	411 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ITFG1	Q8TB96	612 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	EPS8L3	Q8TE67	593 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	FBF1	Q8TES7	1133 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ING5	Q8WYH8	240 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	IRF7	Q92985	503 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ACD	Q96AP0	544 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ZSWIM3	Q96MP5	696 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	PSKH2	Q96QS6	385 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	C2orf49	Q9BVC5	232 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	CINP	Q9BW66	212 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	FSD1L	Q9BXM9	530 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	IL22	Q9GZX6	179 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	UBP1	Q9NZI7	540 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	SAMD15	Q9P1V8	674 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	VPS18	Q9P253	973 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	BCCIP	Q9P287	314 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	RABGEF1	Q9UJ41	708 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	VPS28	Q9UK41	221 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	OR51B4	Q9Y5P0	310 aa		13.91	□□□□□ -0.18
IRF3-229	ENST00000601373	ATG2A	Q2TAZ0	1938 aa		13.9	□□□□□ -0.18
IRF3-229	ENST00000601373	PMPCB	O75439	489 aa		13.9	□□□□□ -0.18
IRF3-229	ENST00000601373	ZMPSTE24	O75844	475 aa		13.9	□□□□□ -0.18
IRF3-229	ENST00000601373	PRAMEF12	O95522	483 aa		13.9	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms