RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	MAPKAPK2	P49137	400 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	NDST2	P52849	883 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	BASP1	P80723	227 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	MLLT1	Q03111	559 aa	Predicted RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF33A	Q06730	810 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	MGAT5	Q09328	741 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	DNAJC3	Q13217	504 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC1A5	Q15758	541 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	SEPT7	Q16181	437 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	ALF	Q53S48	1182 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	RARS2	Q5T160	578 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	TTC39B	Q5VTQ0	682 aa	Predicted RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	LVRN	Q6Q4G3	990 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	ANKMY2	Q8IV38	441 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	AGGF1	Q8N302	714 aa	eCLIP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	TTC16	Q8NEE8	873 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	HTR3C	Q8WXA8	447 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	HDAC11	Q96DB2	347 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	MTBP	Q96DY7	904 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	CELF6	Q96J87	481 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	ANAPC1	Q9H1A4	1944 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	TCRBV9S1A1T	A0A576	114 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	E2F8	A0AVK6	867 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	FOXO6	A8MYZ6	492 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	GOLGA8M	H3BSY2	632 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	DFFA	O00273	331 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	CLDN11	O75508	207 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	GLP2R	O95838	553 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	INHBA	P08476	426 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	HOXB8	P17481	243 aa	Predicted RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	TPSB2	P20231	275 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	PRKCH	P24723	683 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	OR1E1	P30953	314 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	MAGEA3	P43357	314 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	CDH4	P55283	916 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	CDK16	Q00536	496 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	PPID	Q08752	370 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	TPSAB1	Q15661	275 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	BBS9	Q3SYG4	887 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	AFMID	Q63HM1	303 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	GPR149	Q86SP6	731 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	TBC1D1	Q86TI0	1168 aa	Predicted RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC26A11	Q86WA9	606 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	ARHGAP12	Q8IWW6	846 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	TP53INP2	Q8IXH6	220 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	C4orf33	Q8N1A6	199 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	NETO2	Q8NC67	525 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	SH3RF2	Q8TEC5	729 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	C10orf82	Q8WW14	230 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	USP13	Q92995	863 aa	Predicted RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	P2RY11	Q96G91	374 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	APOPT1	Q96IL0	206 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	ANKRD27	Q96NW4	1050 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	TSGA13	Q96PP4	275 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	PAIP2	Q9BPZ3	127 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	SMG9	Q9H0W8	520 aa	Known RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	NDFIP2	Q9NV92	336 aa		11.9	□□□□□ -0.5
VRK3-223	ENST00000601341	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	11.9	□□□□□ -0.5
VRK3-223	ENST00000601341		A0A1B0GVM2	712 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341		A0A1W2PPM1	405 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	TYW5	A2RUC4	315 aa	Known RBP	11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	TCAF2	A6NFQ2	919 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	GCAT	O75600	419 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	KRT37	O76014	449 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	MT-ND3	P03897	115 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CEBPB	P17676	345 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CCND1	P24385	295 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ELK3	P41970	407 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	YBEY	P58557	167 aa	Predicted RBP	11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	RPS24	P62847	133 aa	Known RBP	11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CDK18	Q07002	472 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ADAM15	Q13444	863 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	DBN1	Q16643	649 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ANKRD54	Q6NXT1	300 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	SH2D5	Q6ZV89	423 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CHST9	Q7L1S5	443 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	TRIM42	Q8IWZ5	723 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	FAM217A	Q8IXS0	508 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CFAP52	Q8N1V2	620 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CPXM2	Q8N436	756 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ATPAF2	Q8N5M1	289 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ITFG1	Q8TB96	612 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	RAB3IL1	Q8TBN0	382 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	LRRN4	Q8WUT4	740 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ING5	Q8WYH8	240 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	TMA16	Q96EY4	203 aa	Known RBP	11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	MYEOV	Q96EZ4	313 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	SLC39A8	Q9C0K1	460 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	KIF9	Q9HAQ2	790 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	ZNF212	Q9UDV6	495 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	GRID1	Q9ULK0	1009 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	CCL26	Q9Y258	94 aa		11.9	□□□□□ -0.51
VRK3-223	ENST00000601341	TCRBV7S3A2	A0A539	114 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	ARHGAP42	A6NI28	874 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	SCAMP3	O14828	347 aa	Known RBP	11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	LINC01565	O15544	149 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	TSPAN3	O60637	253 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	RAMP2	O60895	175 aa		11.89	□□□□□ -0.51
VRK3-223	ENST00000601341	ATP5B	P06576	529 aa	Known RBP	11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms