RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ARSIQ5FYB1 569 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 OTUD1Q5VV17 481 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 BROXQ5VW32 411 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 LRRC31Q6UY01 552 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF783Q6ZMS7 281 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 GCNT7Q6ZNI0 430 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 Q6ZSR6 202 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 TMC6Q7Z403 805 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 ZNF605Q86T29 641 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 NOP9Q86U38 636 aaKnown RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 ZSCAN30Q86W11 494 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 SLC22A18ASQ8N1D0 253 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 NT5C3BQ969T7 300 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 PGAP3Q96FM1 320 aaPredicted RBP12.78□□□□□ -0.36
TRIM28-212ENST00000597995 WBP1Q96G27 269 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 BMFQ96LC9 184 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 STK33Q9BYT3 514 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 GPR27Q9NS67 375 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 PIGVQ9NUD9 493 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 IL36AQ9UHA7 158 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 STAP1Q9ULZ2 295 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 CSNK1G3Q9Y6M4 447 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 TRPM6Q9BX84 2022 aa12.78□□□□□ -0.36
TRIM28-212ENST00000597995 IGLV3-10A0A075B6K4 115 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 A0A0D9SEW6 157 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 LY6G6EA0A0G2JKS1 128 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 F8VZ95 297 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 K7ESM1 405 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SMAD6O43541 496 aaKnown RBP12.77□□□□□ -0.37
TRIM28-212ENST00000597995 ADCY5O95622 1261 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 PLA2G2AP14555 144 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 TFE3P19532 575 aaPredicted RBP12.77□□□□□ -0.37
TRIM28-212ENST00000597995 RRM1P23921 792 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SCNN1AP37088 669 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 NEK3P51956 506 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 CLDN2P57739 230 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 GABREP78334 506 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 RHDQ02161 417 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SEL1L3Q68CR1 1132 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 KIAA1161Q6NSJ0 714 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 RETSATQ6NUM9 610 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 C22orf39Q6P5X5 142 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 IGF2-ASQ6U949 168 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 PCSK4Q6UW60 755 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 KYAT3Q6YP21 454 aaKnown RBP12.77□□□□□ -0.37
TRIM28-212ENST00000597995 DPY19L3Q6ZPD9 716 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 APTXQ7Z2E3 356 aaKnown RBP12.77□□□□□ -0.37
TRIM28-212ENST00000597995 CHST14Q8NCH0 376 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 GRAMD1AQ96CP6 724 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 FEM1CQ96JP0 617 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SLC17A9Q9BYT1 436 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 CEP44Q9C0F1 390 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 ABCG4Q9H172 646 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SYNCQ9H7C4 482 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 POLR1BQ9H9Y6 1135 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 FZD3Q9NPG1 666 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 ANLNQ9NQW6 1124 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.77□□□□□ -0.372e-6■■□□□ 11.5
TRIM28-212ENST00000597995 NCKIPSDQ9NZQ3 722 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 TMEM63CQ9P1W3 806 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SIK3Q9Y2K2 1263 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 U3KQA8 63 aa12.77□□□□□ -0.37
TRIM28-212ENST00000597995 SETXQ7Z333 2677 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 SPTY2D1-AS1A0A0U1RR47 76 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 CXorf51AA0A1B0GTR3 108 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ILVBLA1L0T0 632 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 H3BM21 787 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 I6L893 689 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 RNF103O00237 685 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 AP1G1O43747 822 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 USP12O75317 370 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 CSO75390 466 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ZNF821O75541 412 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 LEFTY1O75610 366 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ZIC2O95409 532 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 CSF2P04141 144 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 MPOP05164 745 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 MMEP08473 750 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 NME1P15531 152 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ITGB7P26010 798 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 OR1E1P30953 314 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 L1CAMP32004 1257 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 COPB1P53618 953 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 TMPRSS3P57727 454 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 BPIFB4P59827 614 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 CFHR1Q03591 330 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 DEUP1Q05D60 604 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 FZD2Q14332 565 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 C2CD6Q53TS8 623 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 TAF3Q5VWG9 929 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 TRNP1Q6NT89 227 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 ZCCHC8Q6NZY4 707 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 LINGO4Q6UY18 593 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 PLPP6Q8IY26 295 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 PCDH20Q8N6Y1 951 aaKnown RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 EPS8L1Q8TE68 723 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 LENG8Q96PV6 779 aaPredicted RBP12.76□□□□□ -0.37
TRIM28-212ENST00000597995 HEPHQ9BQS7 1158 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 DPH1Q9BZG8 443 aa12.76□□□□□ -0.37
TRIM28-212ENST00000597995 TNKS2Q9H2K2 1166 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms