RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LENG8Q96PV6 779 aaPredicted RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 MED15Q96RN5 788 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 SLC25A18Q9H1K4 315 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 GEMIN8Q9NWZ8 242 aaKnown RBP10.35□□□□□ -0.75
TRIM28-210ENST00000597618 VPS51Q9UID3 782 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 CFAP45Q9UL16 551 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 PADI4Q9UM07 663 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 TBC1D30Q9Y2I9 924 aa10.35□□□□□ -0.75
TRIM28-210ENST00000597618 RP1P56715 2156 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 A0A1B0GVL5 298 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 RNF225M0QZC1 329 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CASC3O15234 703 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 NVLO15381 856 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 SPINT1O43278 529 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 AP1G1O43747 822 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 GCATO75600 419 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 LEFTY1O75610 366 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 JMJD7P0C870 316 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 RRM1P23921 792 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CMA1P23946 247 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 ITGB7P26010 798 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CCKBRP32239 447 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 GPD2P43304 727 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 IRAK1P51617 712 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 ADKP55263 362 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CDH4P55283 916 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PFN3P60673 137 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PITX1P78337 314 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CDK17Q00537 523 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 DPYDQ12882 1025 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 EIF2B5Q13144 721 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 SRSF6Q13247 344 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PTK2BQ14289 1009 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 ARSIQ5FYB1 569 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 TPRG1LQ5T0D9 272 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 C22orf39Q6P5X5 142 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 B3GNT8Q7Z7M8 397 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PHACTR4Q8IZ21 702 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 RBFAQ8N0V3 343 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PPM1KQ8N3J5 372 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 ARL10Q8N8L6 244 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 DCAF4L2Q8NA75 395 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 CHST14Q8NCH0 376 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 STK32AQ8WU08 396 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 GFM1Q96RP9 751 aaKnown RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 KLF6Q99612 283 aaPredicted RBP10.34□□□□□ -0.75
TRIM28-210ENST00000597618 LRRC61Q9BV99 259 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 SLC13A1Q9BZW2 595 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 THAP9Q9H5L6 903 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 DDIT4Q9NX09 232 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 PISDQ9UG56 409 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 VANGL2Q9ULK5 521 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 HPSEQ9Y251 543 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 FADS3Q9Y5Q0 445 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 KIF26BQ2KJY2 2108 aa10.34□□□□□ -0.75
TRIM28-210ENST00000597618 NBPF19A0A087WUL8 3843 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SYNJ2BP-COX16A0A087WUM0 186 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 E5RJQ4 531 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 K7ELQ4 463 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 K7ERQ8 282 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 M0QYT0 321 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 RNF103O00237 685 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SMAD6O43541 496 aaKnown RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SNAP91O60641 907 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 F13A1P00488 732 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 RHOCP08134 193 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 ZSCAN22P10073 491 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 CR2P20023 1033 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 NOS2P35228 1153 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SYKP43405 635 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 THOP1P52888 689 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SERINC3Q13530 473 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 C1orf61Q13536 156 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 MEA1Q16626 185 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 DPY19L3Q6ZPD9 716 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 VASH2Q86V25 355 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 ZNF564Q8TBZ8 553 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SCG3Q8WXD2 468 aaKnown RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 ASB12Q8WXK4 309 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SLC35C1Q96A29 364 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 CCDC74AQ96AQ1 378 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 TMEM159Q96B96 161 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 PPP1R13BQ96KQ4 1090 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 TMEM74Q96NL1 305 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 PSMB7Q99436 277 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 TSG101Q99816 390 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 C1QTNF2Q9BXJ5 285 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SLC4A5Q9BY07 1137 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 TNKS2Q9H2K2 1166 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 ADNPQ9H2P0 1102 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 TCEAL2Q9H3H9 227 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 COX16Q9P0S2 106 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 ARMCX3Q9UH62 379 aaPredicted RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 RCOR1Q9UKL0 485 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 LOXL2Q9Y4K0 774 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 PCDHB11Q9Y5F2 797 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 HS3ST4Q9Y661 456 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 WASF2Q9Y6W5 498 aa10.33□□□□□ -0.76
TRIM28-210ENST00000597618 SPTBN1Q01082 2364 aaKnown RBP10.33□□□□□ -0.76
TRIM28-210ENST00000597618 IGLON5A6NGN9 336 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms