RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TADA1Q96BN2 335 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 MFSD3Q96ES6 412 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 RANBP9Q96S59 729 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 POLR1EQ9GZS1 481 aaKnown RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 KDM4CQ9H3R0 1056 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 MANSC1Q9H8J5 431 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ATP13A1Q9HD20 1204 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 PRKAG2Q9UGJ0 569 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 STOML2Q9UJZ1 356 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 PHTF1Q9UMS5 762 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 TCAF1Q9Y4C2 921 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 INSL6Q9Y581 213 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZFP37Q9Y6Q3 630 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 HEATR9A2RTY3 570 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 CCT8L1PA6NM43 557 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZBBXA8MT70 800 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 BIRC5O15392 142 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 IL1BP01584 269 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 F11P03951 625 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 SERPINB4P48594 390 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 LIMK2P53671 638 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZNF177Q13360 481 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 LAMB3Q13751 1172 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZNF235Q14590 738 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 HSP90AA5PQ58FG0 334 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 RNF187Q5TA31 235 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 FYB2Q5VWT5 728 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 RFWD3Q6PCD5 774 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZNF783Q6ZMS7 281 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 STRA8Q7Z7C7 330 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 CIR1Q86X95 450 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.39□□□□□ -0.11
LIG3-205ENST00000585941 GBP7Q8N8V2 638 aaPredicted RBP14.39□□□□□ -0.11
LIG3-205ENST00000585941 RAB3IL1Q8TBN0 382 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 PDFQ9HBH1 243 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 PCMTD2Q9NV79 361 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 KLHL14Q9P2G3 628 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 PSAT1Q9Y617 370 aa14.39□□□□□ -0.11
LIG3-205ENST00000585941 OBSL1O75147 1896 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 H3BNC9 293 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 KDELR3O43731 214 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 EPOP01588 193 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 KLKB1P03952 638 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 ADH1AP07327 375 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 MBL2P11226 248 aaPredicted RBP14.38□□□□□ -0.11
LIG3-205ENST00000585941 NEFHP12036 1026 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 CES1P23141 567 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 NMBRP28336 390 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 ACVRL1P37023 503 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 CD86P42081 329 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 POLD2P49005 469 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 SERPINB8P50452 374 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 SERPINH1P50454 418 aaKnown RBP14.38□□□□□ -0.11
LIG3-205ENST00000585941 ILF2Q12905 390 aaKnown RBP14.38□□□□□ -0.11
LIG3-205ENST00000585941 POU6F1Q14863 301 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 ALG1LQ6GMV1 187 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 NLRP9Q7RTR0 991 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 CNTN4Q8IWV2 1026 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 CFAP52Q8N1V2 620 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 AUTS2Q8WXX7 1259 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 KLHL5Q96PQ7 755 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 ZBED2Q9BTP6 218 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 SLC13A1Q9BZW2 595 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 RNF38Q9H0F5 515 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 ACTR5Q9H9F9 607 aaPredicted RBP14.38□□□□□ -0.11
LIG3-205ENST00000585941 SEPT3Q9UH03 358 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 AGO1Q9UL18 857 aaKnown RBP14.38□□□□□ -0.11
LIG3-205ENST00000585941 TBC1D30Q9Y2I9 924 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 DENND4CQ5VZ89 1909 aa14.38□□□□□ -0.11
LIG3-205ENST00000585941 C2orf78A6NCI8 922 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 TPP1O14773 563 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 PAPSS2O95340 614 aaPredicted RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 OLFM2O95897 454 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 LRG1P02750 347 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 ALDOAP04075 364 aaKnown RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 MPOP05164 745 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 RHOCP08134 193 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 GSTA1P08263 222 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 CNPP09543 421 aaKnown RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 TROVE2P10155 538 aaKnown RBP eCLIP14.37□□□□□ -0.11
LIG3-205ENST00000585941 PFKLP17858 780 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 TYK2P29597 1187 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 OXCT1P55809 520 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 LACTB2Q53H82 288 aaPredicted RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 ATG16L1Q676U5 607 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 RNF43Q68DV7 783 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 IL31Q6EBC2 164 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 KIAA0930Q6ICG6 404 aaPredicted RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 FAM47EQ6ZV65 393 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 TMEM150AQ86TG1 271 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 ELMOD1Q8N336 334 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 ARRDC2Q8TBH0 407 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 ZNF398Q8TD17 642 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 CCT6BQ92526 530 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 MRPS31Q92665 395 aaKnown RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 MYEOVQ96EZ4 313 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 FEM1CQ96JP0 617 aa14.37□□□□□ -0.11
LIG3-205ENST00000585941 PRICKLE1Q96MT3 831 aaPredicted RBP14.37□□□□□ -0.11
LIG3-205ENST00000585941 GKN1Q9NS71 199 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms