RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 SRPRAP08240 638 aaKnown RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 GLULP15104 373 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 TPSB2P20231 275 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 MCM3P25205 808 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 CTHP32929 405 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 CTSOP43234 321 aaPredicted RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 NUMBP49757 651 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 VSNL1P62760 191 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 ECT2LQ008S8 904 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 PFKPQ01813 784 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 TDGQ13569 410 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 TPSAB1Q15661 275 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 NAIF1Q69YI7 327 aaPredicted RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 LINGO4Q6UY18 593 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 LEKR1Q6ZMV7 388 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 RALGPS2Q86X27 583 aaPredicted RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 PPIL6Q8IXY8 311 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 SH2D3CQ8N5H7 860 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 KDM1BQ8NB78 822 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 TTC8Q8TAM2 541 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 ARRDC2Q8TBH0 407 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.4■□□□□ 0.226e-8■■■■□ 26.7
SS18-226ENST00000585241 ART4Q93070 314 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 EXOC4Q96A65 974 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 IMP4Q96G21 291 aaKnown RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 MYO19Q96H55 970 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 CINPQ9BW66 212 aaPredicted RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 PARD6BQ9BYG5 372 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 CEP44Q9C0F1 390 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 POLR1EQ9GZS1 481 aaKnown RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 NT5MQ9NPB1 228 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 ELOVL2Q9NXB9 296 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 SLC25A13Q9UJS0 675 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 ERVW-1Q9UQF0 538 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 MIA3Q5JRA6 1907 aa16.4■□□□□ 0.22
SS18-226ENST00000585241 MUC22E2RYF6 1773 aaPredicted RBP16.4■□□□□ 0.22
SS18-226ENST00000585241 MYO10Q9HD67 2058 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 PRUNE2Q8WUY3 3088 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 ERI2A8K979 691 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 SPECC1L-ADORA2AF8WAN1 911 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 ATP9BO43861 1147 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 NEBLO76041 1014 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 ATP5BP06576 529 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 DLDP09622 509 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 SRFP11831 508 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 SRCP12931 536 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CES1P23141 567 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 GRIA2P42262 883 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CSNK1DP48730 415 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CARSP49589 748 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 ITGA8P53708 1063 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 BASP1P80723 227 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 CDK16Q00536 496 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CAV1Q03135 178 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 KDSRQ06136 332 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 NSUN2Q08J23 767 aaKnown RBP eCLIP16.39■□□□□ 0.21
SS18-226ENST00000585241 NIPAL4Q0D2K0 466 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CALCOCO2Q13137 446 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 CBLBQ13191 982 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 PTPRNQ16849 979 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 RALGPS1Q5JS13 557 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 KCTD11Q693B1 232 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 TSEN2Q8NCE0 465 aaKnown RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 PRCCQ92733 491 aaPredicted RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 OXNAD1Q96HP4 312 aaPredicted RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 HINFPQ9BQA5 517 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 MLPHQ9BV36 600 aaPredicted RBP16.39■□□□□ 0.21
SS18-226ENST00000585241 DUSP12Q9UNI6 340 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 F5P12259 2224 aa16.39■□□□□ 0.21
SS18-226ENST00000585241 K7ERQ8 282 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 SMAD6O43541 496 aaKnown RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 ZNF821O75541 412 aaPredicted RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 ANXA9O76027 345 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 TMEM63AO94886 807 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 SUN1O94901 812 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 KAT7O95251 611 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 APODP05090 189 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 MMP2P08253 660 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 RGRP47804 291 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 SOX9P48436 509 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 STK19P49842 368 aaPredicted RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 FAXCQ5TGI0 409 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 C22orf39Q6P5X5 142 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 CCNI2Q6ZMN8 369 aaPredicted RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 PRPF39Q86UA1 669 aaKnown RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 PLPP6Q8IY26 295 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 PCDH20Q8N6Y1 951 aaKnown RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 MCUQ8NE86 351 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 FBXO25Q8TCJ0 367 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 NUDCD1Q96RS6 583 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 P2RY13Q9BPV8 354 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 NEUROG2Q9H2A3 272 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 VPS45Q9NRW7 570 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 FCF1Q9Y324 198 aaKnown RBP16.38■□□□□ 0.21
SS18-226ENST00000585241 STARD13Q9Y3M8 1113 aa16.38■□□□□ 0.21
SS18-226ENST00000585241 UQCRHLA0A096LP55 91 aa16.37■□□□□ 0.21
SS18-226ENST00000585241 TCRBV7S3A2A0A539 114 aa16.37■□□□□ 0.21
SS18-226ENST00000585241 PSMD3O43242 534 aa16.37■□□□□ 0.21
SS18-226ENST00000585241 NARSO43776 548 aaKnown RBP16.37■□□□□ 0.21
SS18-226ENST00000585241 AP2A1O95782 977 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms