RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 TRIM2Q9C040 744 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 SIL1Q9H173 461 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 HEY2Q9UBP5 337 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 PGAP2Q9UHJ9 254 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 B3GNT3Q9Y2A9 372 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.5□□□□□ -1.69
NUP88-202ENST00000570937 SCN4AP35499 1836 aa4.5□□□□□ -1.69
NUP88-202ENST00000570937 LRRC37AA6NMS7 1700 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 TIAM2Q8IVF5 1701 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 MYH3P11055 1940 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 FFAR2O15552 330 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 TLX3O43711 291 aaPredicted RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 PPP6R2O75170 966 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 SURF6O75683 361 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 RFPL3SP0C7P2 107 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 AKR1A1P14550 325 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 IGFBP2P18065 325 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 SERPINB3P29508 390 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 GYG1P46976 350 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 RFX5P48382 616 aaPredicted RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 RBM5P52756 815 aaKnown RBP eCLIP4.49□□□□□ -1.69
NUP88-202ENST00000570937 TLE3Q04726 772 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 HDAC1Q13547 482 aaPredicted RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 PTK2BQ14289 1009 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 MVPQ14764 893 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 DLGAP5Q15398 846 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 TRIM60Q495X7 471 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 LRRC24Q50LG9 513 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 SYCP2LQ5T4T6 812 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 GORABQ5T7V8 394 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 WDR93Q6P2C0 686 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 GATAD2AQ86YP4 633 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 RHPN2Q8IUC4 686 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 ERC1Q8IUD2 1116 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 RPAP2Q8IXW5 612 aaPredicted RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 ARFGAP1Q8N6T3 406 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 SRFBP1Q8NEF9 429 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 TDRD7Q8NHU6 1098 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 FAM71BQ8TC56 605 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 KAT2BQ92831 832 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 EID2BQ96D98 161 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 MCRS1Q96EZ8 462 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 SLC39A13Q96H72 371 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 FAM84BQ96KN1 310 aaPredicted RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 PRPF18Q99633 342 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 PUS3Q9BZE2 481 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 WDR12Q9GZL7 423 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 MOV10Q9HCE1 1003 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 MYOZ2Q9NPC6 264 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 PAPOLBQ9NRJ5 636 aaKnown RBP4.49□□□□□ -1.69
NUP88-202ENST00000570937 TMEM45AQ9NWC5 275 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 CDC23Q9UJX2 597 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 CCDC88AQ3V6T2 1871 aa4.49□□□□□ -1.69
NUP88-202ENST00000570937 ZNF609O15014 1411 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 TAF1P21675 1872 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 C3orf70A6NLC5 250 aaPredicted RBP4.48□□□□□ -1.69
NUP88-202ENST00000570937 F8W810 466 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 RPP40O75818 363 aaKnown RBP4.48□□□□□ -1.69
NUP88-202ENST00000570937 KAT7O95251 611 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 CYP3A4P08684 503 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 SETSIPP0DME0 302 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 KLRK1P26718 216 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 NF2P35240 595 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 TNFAIP1Q13829 316 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 SPARCL1Q14515 664 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 ANXA2RQ3ZCQ2 193 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 CCDC158Q5M9N0 1113 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 RINT1Q6NUQ1 792 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 SLC39A5Q6ZMH5 540 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 ATG9AQ7Z3C6 839 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 IRF2BP2Q7Z5L9 587 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 APOBEC3FQ8IUX4 373 aaKnown RBP4.48□□□□□ -1.69
NUP88-202ENST00000570937 ZNF366Q8N895 744 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 EXD3Q8N9H8 876 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 C9orf106Q8NAJ2 232 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 OR52N4Q8NGI2 321 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 NAF1Q96HR8 494 aaKnown RBP4.48□□□□□ -1.69
NUP88-202ENST00000570937 NEUROD6Q96NK8 337 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 GPR78Q96P69 363 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 TUBB6Q9BUF5 446 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 PRDM16Q9HAZ2 1276 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 ABT1Q9ULW3 272 aaKnown RBP4.48□□□□□ -1.69
NUP88-202ENST00000570937 HS3ST3B1Q9Y662 390 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 DUOX1Q9NRD9 1551 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 COL4A5P29400 1685 aa4.48□□□□□ -1.69
NUP88-202ENST00000570937 FAM205AQ6ZU69 1335 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 PASKQ96RG2 1323 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 CEP350Q5VT06 3117 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 A0A087WV62 115 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 TRBV5-3A0A0A0MS03 114 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 A0A1B0GUL7 405 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 CCDC194A0A1B0GVG4 234 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 ABHD14A-ACY1A0A1B0GW23 586 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 AQP12BA6NM10 295 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 M0QYT0 321 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 SNAP23O00161 211 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 PRPF4O43172 522 aaKnown RBP eCLIP4.47□□□□□ -1.69
NUP88-202ENST00000570937 DNPH1O43598 174 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 ASNA1O43681 348 aa4.47□□□□□ -1.69
NUP88-202ENST00000570937 CELF2O95319 508 aaKnown RBP4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms