RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 TLR8Q9NR97 1041 aaKnown RBP20.57■□□□□ 0.88
CLN3-230ENST00000568076 NSMCE4AQ9NXX6 385 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 ZNF212Q9UDV6 495 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 DOCK4Q8N1I0 1966 aa20.57■□□□□ 0.88
CLN3-230ENST00000568076 CCDC22O60826 627 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 IGLV3-27P01718 113 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 CALB2P22676 271 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 WNT3AP56704 352 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SLC10A7Q0GE19 358 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 IHHQ14623 411 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 PCSK7Q16549 785 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 C10orf120Q5SQS8 335 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SWT1Q5T5J6 900 aaKnown RBP20.56■□□□□ 0.88
CLN3-230ENST00000568076 RINLQ6ZS11 566 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 CIR1Q86X95 450 aaPredicted RBP20.56■□□□□ 0.88
CLN3-230ENST00000568076 SLAIN1Q8ND83 568 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SPPL2BQ8TCT7 592 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 MYEOVQ96EZ4 313 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SPATA17Q96L03 361 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 PPP1R2P1Q96PQ5 205 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 BTBD10Q9BSF8 475 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SLC25A51Q9H1U9 297 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 NT5MQ9NPB1 228 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 TREX1Q9NSU2 369 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 TET1Q8NFU7 2136 aa20.56■□□□□ 0.88
CLN3-230ENST00000568076 SLC12A8A0AV02 714 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 NEBLO76041 1014 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 GALTP07902 379 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 GRK2P25098 689 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 MAXP61244 160 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 MPP1Q00013 466 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 DUSP4Q13115 394 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 CTBP1Q13363 440 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 TUBB3Q13509 450 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 BFSP2Q13515 415 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 CNGA3Q16281 694 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 MAVSQ7Z434 540 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 PSMG2Q969U7 264 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 IMP4Q96G21 291 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 C1QTNF1Q9BXJ1 281 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 MRM3Q9HC36 420 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 OLA1Q9NTK5 396 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 PNPOQ9NVS9 261 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 LRFN2Q9ULH4 789 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 WFS1O76024 890 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 GNRH1P01148 92 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 GM2AP17900 193 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 HARS2P49590 506 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 PSEN1P49768 467 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 RENBPP51606 427 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 ABCE1P61221 599 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 WDR75Q8IWA0 830 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 MFSD6LQ8IWD5 586 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 PTCD2Q8WV60 388 aaKnown RBP20.55■□□□□ 0.88
CLN3-230ENST00000568076 FATE1Q969F0 183 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 CCSER2Q9H7U1 834 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 NMRAL1Q9HBL8 299 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 ATP13A1Q9HD20 1204 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 GREB1Q4ZG55 1949 aa20.55■□□□□ 0.88
CLN3-230ENST00000568076 DRGXA6NNA5 263 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 PALM2-AKAP2B1ALY0 433 aaPredicted RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 MMP2P08253 660 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 ZDHHC11BP0C7U3 371 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 HADHAP40939 763 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 WLSQ5T9L3 541 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 PRSS55Q6UWB4 352 aaPredicted RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 NAPRTQ6XQN6 538 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 NPAS4Q8IUM7 802 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 TMEM151AQ8N4L1 468 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 GIPC2Q8TF65 315 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 SEPT8Q92599 483 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 PABPC5Q96DU9 382 aaKnown RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 SIKE1Q9BRV8 207 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 CCDC106Q9BWC9 280 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 OXCT2Q9BYC2 517 aaPredicted RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 TAS2R1Q9NYW7 299 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 TBKBP1A7MCY6 615 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 PHGDHO43175 533 aaKnown RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 ESRRAP11474 423 aaPredicted RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 SAT1P21673 171 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 CCND1P24385 295 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 ALDH18A1P54886 795 aaKnown RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 USP10Q14694 798 aaKnown RBP20.54■□□□□ 0.88
CLN3-230ENST00000568076 MARC1Q5VT66 337 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 NADSYN1Q6IA69 706 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 SLC25A41Q8N5S1 370 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 RILPQ96NA2 401 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 ARNT2Q9HBZ2 717 aa20.54■□□□□ 0.88
CLN3-230ENST00000568076 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP20.53■□□□□ 0.88
CLN3-230ENST00000568076 TTC24A2A3L6 582 aaPredicted RBP20.53■□□□□ 0.88
CLN3-230ENST00000568076 ZNF195O14628 629 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 GSC2O15499 205 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 ADAM12O43184 909 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 SIN3BO75182 1162 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 SBK3P0C264 359 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 SLC35E2BP0CK96 405 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 ATF6P18850 670 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 AVPR1AP37288 418 aa20.53■□□□□ 0.88
CLN3-230ENST00000568076 CD86P42081 329 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms