RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PSMC3P17980 439 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 KCNA5P22460 613 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 DSC2Q02487 901 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 PDIA2Q13087 525 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 SPARCL1Q14515 664 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 KCTD11Q693B1 232 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 RETSATQ6NUM9 610 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 XPO6Q96QU8 1125 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 PHACTR1Q9C0D0 580 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 CDC42EP4Q9H3Q1 356 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 HPS4Q9NQG7 708 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 GRXCR2A6NFK2 248 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 BANF1O75531 89 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 TMCC1O94876 653 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 HSD17B3P37058 310 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 GRIA1P42261 906 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 GEMP55040 296 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 CYTH1Q15438 398 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 SKIV2LQ15477 1246 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 MSS51Q4VC12 460 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 MTSS1LQ765P7 747 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 CAND1Q86VP6 1230 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 KLHDC8BQ8IXV7 354 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 IMP4Q96G21 291 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 PSKH2Q96QS6 385 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 ECT2Q9H8V3 914 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 LRRC40Q9H9A6 602 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 XAB2Q9HCS7 855 aaKnown RBP31.06■■■□□ 2.56
CTCF-203ENST00000566078 EPS15L1Q9UBC2 864 aa31.06■■■□□ 2.56
CTCF-203ENST00000566078 PSMD3O43242 534 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 ECI2O75521 394 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 NIPAL4Q0D2K0 466 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 OLIG2Q13516 323 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 UAP1Q16222 522 aaPredicted RBP31.05■■■□□ 2.56
CTCF-203ENST00000566078 BBS9Q3SYG4 887 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 MGME1Q9BQP7 344 aa31.05■■■□□ 2.56
CTCF-203ENST00000566078 TTC24A2A3L6 582 aaPredicted RBP31.04■■■□□ 2.56
CTCF-203ENST00000566078 E7ESA3 106 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 EIF3HO15372 352 aaKnown RBP eCLIP31.04■■■□□ 2.56
CTCF-203ENST00000566078 AVILO75366 819 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 SUN1O94901 812 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 CD86P42081 329 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 MAGEA4P43358 317 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 GEMIN4P57678 1058 aaKnown RBP31.04■■■□□ 2.56
CTCF-203ENST00000566078 FASTKD3Q14CZ7 662 aaKnown RBP31.04■■■□□ 2.56
CTCF-203ENST00000566078 INO80DQ53TQ3 878 aaPredicted RBP31.04■■■□□ 2.56
CTCF-203ENST00000566078 HP1BP3Q5SSJ5 553 aaPredicted RBP31.04■■■□□ 2.56
CTCF-203ENST00000566078 C12orf40Q86WS4 652 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 ZBED8Q8IZ13 594 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 SEMA3CQ99985 751 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 SEMA4AQ9H3S1 761 aa31.04■■■□□ 2.56
CTCF-203ENST00000566078 OTOL1A6NHN0 477 aaPredicted RBP31.03■■■□□ 2.56
CTCF-203ENST00000566078 TRIM24O15164 1050 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 FOSL2P15408 326 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 RELL1Q8IUW5 271 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 CPA6Q8N4T0 437 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 DDX51Q8N8A6 666 aaKnown RBP eCLIP31.03■■■□□ 2.56
CTCF-203ENST00000566078 ARRDC2Q8TBH0 407 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 PPM1EQ8WY54 764 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 FBXO10Q9UK96 956 aa31.03■■■□□ 2.56
CTCF-203ENST00000566078 FCF1Q9Y324 198 aaKnown RBP31.03■■■□□ 2.56
CTCF-203ENST00000566078 USP12O75317 370 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 SASH3O75995 380 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 MT-CO1P00395 513 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 MMP2P08253 660 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 DGKGP49619 791 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 SERPINH1P50454 418 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 MPP3Q13368 585 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 SMAD4Q13485 552 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 DMC1Q14565 340 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 ALG1LQ6GMV1 187 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 LRRC8BQ6P9F7 803 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 TRMT10CQ7L0Y3 403 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 PRPF39Q86UA1 669 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 AHI1Q8N157 1196 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 IPMKQ8NFU5 416 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 EXOC2Q96KP1 924 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 C9orf72Q96LT7 481 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 NUMBLQ9Y6R0 609 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 PMPCBO75439 489 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 GJB3O75712 270 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 MLNP12872 115 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 GDI1P31150 447 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 CTSOP43234 321 aaPredicted RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 DNAJC21Q5F1R6 531 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 SPDYCQ5MJ68 293 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 UBAP2Q5T6F2 1119 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 NAPEPLDQ6IQ20 393 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 ANKMY2Q8IV38 441 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 GUCD1Q96NT3 240 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 RPP25Q9BUL9 199 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 PABPC3Q9H361 631 aaKnown RBP31.02■■■□□ 2.56
CTCF-203ENST00000566078 NINJ2Q9NZG7 142 aa31.02■■■□□ 2.56
CTCF-203ENST00000566078 MBTPS2O43462 519 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 TULP3O75386 442 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 MAGEA3P43357 314 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 RGRP47804 291 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 HTR4Q13639 388 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 RUNX3Q13761 415 aa31.01■■■□□ 2.55
CTCF-203ENST00000566078 GAB4Q2WGN9 574 aa31.01■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms