RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 KLHL40Q2TBA0 621 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 CARD16Q5EG05 197 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 FIGNQ5HY92 759 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 RWDD4Q6NW29 188 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 CYP4V2Q6ZWL3 525 aaPredicted RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 ERN2Q76MJ5 926 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 PRPF39Q86UA1 669 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 RTL3Q8N8U3 475 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 EDEM3Q9BZQ6 932 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 KLC2Q9H0B6 622 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 HAUS4Q9H6D7 363 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 ERVMER34-1Q9H9K5 563 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 AASDHPPTQ9NRN7 309 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 SEPT11Q9NVA2 429 aaKnown RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 FARP1Q9Y4F1 1045 aaPredicted RBP15.16■□□□□ 0.02
CLN3-213ENST00000565047 DOCK9Q9BZ29 2069 aa15.16■□□□□ 0.02
CLN3-213ENST00000565047 CFAP47Q6ZTR5 3102 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 TMEM191CA6NGB0 347 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 KPNA3O00505 521 aaPredicted RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 RNGTTO60942 597 aaKnown RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 GZMAP12544 262 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 TNFAIP3P21580 790 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 ETFBP38117 255 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 CCNHP51946 323 aaPredicted RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 AIF1P55008 147 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 C21orf59P57076 290 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 IL9RQ01113 521 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 SUZ12Q15022 739 aaKnown RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 TMEM259Q4ZIN3 620 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 ADAT2Q7Z6V5 191 aaKnown RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 RHBDD1Q8TEB9 315 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 CCDC114Q96M63 670 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 CDC6Q99741 560 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 HEPHQ9BQS7 1158 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 TRIM7Q9C029 511 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 CBX8Q9HC52 389 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 PCDHB9Q9Y5E1 797 aa15.15■□□□□ 0.02
CLN3-213ENST00000565047 TP53BP1Q12888 1972 aaPredicted RBP15.15■□□□□ 0.02
CLN3-213ENST00000565047 A0A1W2PQU0 124 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 SYCE3A1L190 88 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 PRAMEF26H0Y7S4 382 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 SPINT1O43278 529 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 RAMP2O60895 175 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 ITGB7P26010 798 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 EPHB2P29323 1055 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GKP32189 559 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GRK6P43250 576 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 OVGP1Q12889 678 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 FGL2Q14314 439 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 POLD3Q15054 466 aaPredicted RBP15.14■□□□□ 0.01
CLN3-213ENST00000565047 SFMBT2Q5VUG0 894 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 HGSNATQ68CP4 663 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 TMC6Q7Z403 805 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 HORMAD1Q86X24 394 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GATAD2AQ86YP4 633 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 UMODL1-AS1Q8N2C9 162 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GRIN3AQ8TCU5 1115 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 SKA1Q96BD8 255 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 PEBP4Q96S96 227 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 LRRC19Q9H756 370 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GDF3Q9NR23 364 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 GPR27Q9NS67 375 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 PARVAQ9NVD7 372 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 HECAQ9UBI9 543 aaPredicted RBP15.14■□□□□ 0.01
CLN3-213ENST00000565047 CA5BQ9Y2D0 317 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 FADS3Q9Y5Q0 445 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 DMXL2Q8TDJ6 3036 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 COL5A1P20908 1838 aaPredicted RBP15.14■□□□□ 0.01
CLN3-213ENST00000565047 CACNA1BQ00975 2339 aa15.14■□□□□ 0.01
CLN3-213ENST00000565047 PLXNB3Q9ULL4 1909 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 TMCO5BA8MYB1 307 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 ATMINO43313 823 aaPredicted RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 TNFSF14O43557 240 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 AP1G1O43747 822 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 GSRP00390 522 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 FTLP02792 175 aaPredicted RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 ADRB3P13945 408 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 EPHA8P29322 1005 aaPredicted RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 BNIP3Q12983 259 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 ASIC2Q16515 512 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 CA9Q16790 459 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 FILIP1LQ4L180 1135 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 SETMARQ53H47 684 aaPredicted RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 EFHC2Q5JST6 749 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 SEL1L3Q68CR1 1132 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 PPP1R2P3Q6NXS1 205 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 SCYL2Q6P3W7 929 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 CCNI2Q6ZMN8 369 aaPredicted RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 LEKR1Q6ZMV7 388 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 PARS2Q7L3T8 475 aaKnown RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 LUZP1Q86V48 1076 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 OR2AP1Q8NGE2 309 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 FNIP1Q8TF40 1166 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 LRIG1Q96JA1 1093 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 ISCUQ9H1K1 167 aa15.13■□□□□ 0.01
CLN3-213ENST00000565047 APOBEC2Q9Y235 224 aaKnown RBP15.13■□□□□ 0.01
CLN3-213ENST00000565047 SLC31A1O15431 190 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 SKILP12757 684 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 PRLRP16471 622 aa15.12■□□□□ 0.01
CLN3-213ENST00000565047 RECQLP46063 649 aaPredicted RBP15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms