RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CFL1P23528 166 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 HOXA11P31270 313 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 HNRNPH1P31943 449 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 CXCR5P32302 372 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 HSPA13P48723 471 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 ALDH5A1P51649 535 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 DRG2P55039 364 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 GSDMDP57764 484 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 CYP4F2P78329 520 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 PDE1BQ01064 536 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 OTUD4Q01804 1114 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 ASPHQ12797 758 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 ITGB3BPQ13352 177 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 PTK2BQ14289 1009 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 GALNT3Q14435 633 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 CASP8Q14790 479 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 NCF4Q15080 339 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 CNGA2Q16280 664 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 BCL2A1Q16548 175 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 NDUFA5Q16718 116 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 HADHQ16836 314 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 KHDC1Q4VXA5 237 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 TMEM240Q5SV17 173 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 THEMIS2Q5TEJ8 643 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 STRIP1Q5VSL9 837 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 TBC1D9BQ66K14 1250 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 ERICH5Q6P6B1 374 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 CLNKQ7Z7G1 428 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SESTD1Q86VW0 696 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 WDR49Q8IV35 697 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 CCDC50Q8IVM0 306 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 ARL14Q8N4G2 192 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SLC44A3Q8N4M1 653 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 NIPA2Q8N8Q9 360 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 PCYOX1LQ8NBM8 494 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 ZNF397Q8NF99 534 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 SLC30A5Q8TAD4 765 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 HSPH1Q92598 858 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SPDL1Q96EA4 605 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SLC47A1Q96FL8 570 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 MSANTD3Q96H12 275 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 NAA15Q9BXJ9 866 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 DPH5Q9H2P9 285 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 RAD21L1Q9H4I0 556 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 AZI2Q9H6S1 392 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 WDR6Q9NNW5 1121 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 DDX4Q9NQI0 724 aaKnown RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 SUCLA2Q9P2R7 463 aaPredicted RBP5.27□□□□□ -1.57
VPS35-205ENST00000563984 ATXN10Q9UBB4 475 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 FAM153AQ9UHL3 310 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 LRCH1Q9Y2L9 728 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 SBNO1A3KN83 1393 aa5.27□□□□□ -1.57
VPS35-205ENST00000563984 FLT1P17948 1338 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 RSF1Q96T23 1441 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 PRAMEF33A0A0G2JMD5 474 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 LOC105371267A0A1B0GV96 52 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8IPA6NC78 632 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 OR6C74A6NCV1 312 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8JA6NMD2 632 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8TH3BQL2 631 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8RI6L899 631 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 K7EPI3 171 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 NDUFS8O00217 210 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 KIAA0355O15063 1070 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PRPSAP2O60256 369 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PRAMEF10O60809 474 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 SMPD2O60906 423 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 SMIM24O75264 130 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 SEC22BO75396 215 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 TACC1O75410 805 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 ZFPL1O95159 310 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 RETP07949 1114 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 FTH1P19P0C7X4 201 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GOLGA8HP0CJ92 632 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PDCP20941 246 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 KRT2P35908 639 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 MSH2P43246 934 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 AMPHP49418 695 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 DIO1P49895 249 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 FXR1P51114 621 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS35-205ENST00000563984 CLCN4P51793 760 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 MYL6P60660 151 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 RPS7P62081 194 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 POLR2GP62487 172 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS35-205ENST00000563984 POU6F2P78424 691 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 S100A12P80511 92 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 MRPS5P82675 430 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 TFAP4Q01664 338 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PPARDQ03181 441 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 KRT17Q04695 432 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 PIGFQ07326 219 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 GALNT1Q10472 559 aaPredicted RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 AIMP1Q12904 312 aaKnown RBP5.26□□□□□ -1.57
VPS35-205ENST00000563984 GIT2Q14161 759 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 TAF12Q16514 161 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 DPYSL2Q16555 572 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 NFIL3Q16649 462 aa5.26□□□□□ -1.57
VPS35-205ENST00000563984 FLYWCH1Q4VC44 716 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms