RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 USP13Q92995 863 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 MRPL57Q9BQC6 102 aaKnown RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 MLPHQ9BV36 600 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 MRPL46Q9H2W6 279 aaKnown RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PREBQ9HCU5 417 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 TUBA8Q9NY65 449 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-231ENST00000557433 RRN3Q9NYV6 651 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 PACSIN3Q9UKS6 424 aa16.5■□□□□ 0.23
SHMT2-231ENST00000557433 ARHGEF37A1IGU5 675 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 FAM155AB1AL88 458 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 C9IYK1 514 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PIRO00625 290 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ZBTB24O43167 697 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CNMDO75829 334 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 STAMBPO95630 424 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CDK4P11802 303 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 GJA9P57773 515 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 TPI1P60174 286 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 RAB10P61026 200 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 SULT2A1Q06520 285 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ARHGAP1Q07960 439 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ADIGQ0VDE8 80 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 MYBPC3Q14896 1274 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CERCAMQ5T4B2 595 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PRAMEF18Q5VWM3 479 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 TRIML2Q8N7C3 387 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 APPL2Q8NEU8 664 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PBXIP1Q96AQ6 731 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ZMAT2Q96NC0 199 aaKnown RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CCT7Q99832 543 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 FTHL17Q9BXU8 183 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 EML4Q9HC35 981 aaKnown RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CHCHD3Q9NX63 227 aaKnown RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 TUBGCP4Q9UGJ1 667 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 MYRFQ9Y2G1 1151 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PCDHGA7Q9Y5G6 932 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 MYO18AQ92614 2054 aaKnown RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 HEATR9A2RTY3 570 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 SDHDO14521 159 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 DLX3O60479 287 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 AMHP03971 560 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PYGLP06737 847 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CD68P34810 354 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 INHBCP55103 352 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 COG7P83436 770 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ITGA7Q13683 1181 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 IKBKEQ14164 716 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ARL13BQ3SXY8 428 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PCID2Q5JVF3 399 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 MAMDC4Q6UXC1 1216 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ALKAL1Q6UXT8 129 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 PACRGLQ8N7B6 248 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 GAB3Q8WWW8 586 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 TMA16Q96EY4 203 aaKnown RBP16.49■□□□□ 0.23
SHMT2-231ENST00000557433 TEKT5Q96M29 485 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 CHRAC1Q9NRG0 131 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 ADA2Q9NZK5 511 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 FZD1Q9UP38 647 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 GJA3Q9Y6H8 435 aa16.49■□□□□ 0.23
SHMT2-231ENST00000557433 LTBP3Q9NS15 1303 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SCN1AP35498 2009 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 TCRBV3S1A0A5B6 114 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 DYTNA2CJ06 578 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 H3BNH8 94 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 ZNF701M0R085 212 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 FZD9O00144 591 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 TRIM24O15164 1050 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 HNRNPRO43390 633 aaKnown RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 USP12O75317 370 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 PGK2P07205 417 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 PDGFRBP09619 1106 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 STMN1P16949 149 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 ATP5F1P24539 256 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SLC5A2P31639 672 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 GTF2A2P52657 109 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 GALNT1Q10472 559 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SV2CQ496J9 727 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 GLRA4Q5JXX5 417 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SAMD4BQ5PRF9 694 aaKnown RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 IL23RQ5VWK5 629 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 CENPLQ8N0S6 344 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SIX6OS1Q8N1H7 587 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 LRRC43Q8N309 656 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 PPTC7Q8NI37 304 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 KCTD4Q8WVF5 259 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 EMID1Q96A84 441 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 PGAP3Q96FM1 320 aaPredicted RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 TSGA13Q96PP4 275 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SPAG4Q9NPE6 437 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 SNTG2Q9NY99 539 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 XPR1Q9UBH6 696 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 PTBP2Q9UKA9 531 aaKnown RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 G3BP2Q9UN86 482 aaKnown RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 AAR2Q9Y312 384 aaKnown RBP16.48■□□□□ 0.23
SHMT2-231ENST00000557433 EP400Q96L91 3159 aa16.48■□□□□ 0.23
SHMT2-231ENST00000557433 CACNG3O60359 315 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 PFDN1O60925 122 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 USP2O75604 605 aaPredicted RBP16.47■□□□□ 0.23
SHMT2-231ENST00000557433 BMP10O95393 424 aa16.47■□□□□ 0.23
SHMT2-231ENST00000557433 HSPA8P11142 646 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms