RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 HORMAD1Q86X24 394 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 SPATS2Q86XZ4 545 aaKnown RBP16.65■□□□□ 0.26
VPS29-207ENST00000549970 PYROXD2Q8N2H3 581 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 RYBPQ8N488 228 aaPredicted RBP16.65■□□□□ 0.26
VPS29-207ENST00000549970 SAP25Q8TEE9 199 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 BPIFA3Q9BQP9 254 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 HEPHQ9BQS7 1158 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 HDAC8Q9BY41 377 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 FZD3Q9NPG1 666 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 RTN4Q9NQC3 1192 aaKnown RBP16.65■□□□□ 0.26
VPS29-207ENST00000549970 PTPRBP23467 1997 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 CHD5Q8TDI0 1954 aa16.65■□□□□ 0.26
VPS29-207ENST00000549970 PLXNB3Q9ULL4 1909 aa16.64■□□□□ 0.26
VPS29-207ENST00000549970 ZZEF1O43149 2961 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 DMXL2Q8TDJ6 3036 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 SMTNL1A8MU46 457 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 TMCO5BA8MYB1 307 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 YKT6O15498 198 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 MAGEC1O60732 1142 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 RAMP2O60895 175 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 TNFAIP3P21580 790 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 NEK3P51956 506 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 ZNF143P52747 638 aaPredicted RBP16.64■□□□□ 0.25
VPS29-207ENST00000549970 SCAPQ12770 1279 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 BNIP3Q12983 259 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 POLD3Q15054 466 aaPredicted RBP16.64■□□□□ 0.25
VPS29-207ENST00000549970 EFHC2Q5JST6 749 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 NEK5Q6P3R8 708 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 DCUN1D2Q6PH85 259 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 IRF2BP2Q7Z5L9 587 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 IQCHQ86VS3 1027 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 ZNF354CQ86Y25 554 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 MCOLN2Q8IZK6 566 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 OXR1Q8N573 874 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 OR6K2Q8NGY2 324 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 BAP1Q92560 729 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 MAGEH1Q9H213 219 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 RETREG1Q9H6L5 497 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 ZDHHC6Q9H6R6 413 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 ERVMER34-1Q9H9K5 563 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 TAS2R14Q9NYV8 317 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 HPCAL4Q9UM19 191 aa16.64■□□□□ 0.25
VPS29-207ENST00000549970 LRRC53A6NM62 1247 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 CREB3O43889 395 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 DKK1O94907 266 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 ADRB3P13945 408 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 ITGB7P26010 798 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 EPHB2P29323 1055 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 L1CAMP32004 1257 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 GKP32189 559 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 GEMIN4P57678 1058 aaKnown RBP16.63■□□□□ 0.25
VPS29-207ENST00000549970 OVGP1Q12889 678 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 ZNF284Q2VY69 593 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 FILIP1LQ4L180 1135 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 PPP1R15BQ5SWA1 713 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 SEL1L3Q68CR1 1132 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 CCNI2Q6ZMN8 369 aaPredicted RBP16.63■□□□□ 0.25
VPS29-207ENST00000549970 EID2Q8N6I1 236 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 TMEM145Q8NBT3 493 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 ISG20Q96AZ6 181 aaKnown RBP16.63■□□□□ 0.25
VPS29-207ENST00000549970 KLHDC7BQ96G42 594 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 CNDP2Q96KP4 475 aaKnown RBP16.63■□□□□ 0.25
VPS29-207ENST00000549970 CNPY3Q9BT09 278 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 MYO6Q9UM54 1294 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 ZFR2Q9UPR6 939 aaKnown RBP16.63■□□□□ 0.25
VPS29-207ENST00000549970 TRPM6Q9BX84 2022 aa16.63■□□□□ 0.25
VPS29-207ENST00000549970 GOLGA4Q13439 2230 aaKnown RBP16.62■□□□□ 0.25
VPS29-207ENST00000549970 ENC1O14682 589 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 ATMINO43313 823 aaPredicted RBP16.62■□□□□ 0.25
VPS29-207ENST00000549970 SDC3O75056 442 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 THEGLP0DJG4 465 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 RXRGP48443 463 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 ZNF165P49910 485 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 OGDHQ02218 1023 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 ASIC2Q16515 512 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 FBXL19Q6PCT2 694 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 PARS2Q7L3T8 475 aaKnown RBP16.62■□□□□ 0.25
VPS29-207ENST00000549970 TMPRSS7Q7RTY8 843 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 MARCH9Q86YJ5 346 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 RTL3Q8N8U3 475 aaKnown RBP16.62■□□□□ 0.25
VPS29-207ENST00000549970 EPAS1Q99814 870 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 SYT11Q9BT88 431 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 FZD10Q9ULW2 581 aa16.62■□□□□ 0.25
VPS29-207ENST00000549970 COL5A1P20908 1838 aaPredicted RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 CXorf51AA0A1B0GTR3 108 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 BUB1O43683 1085 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 KDELR3O43731 214 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 LDOC1O95751 146 aaPredicted RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 DESP17661 470 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 HNRNPA2B1P22626 353 aaKnown RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 AKT2P31751 481 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 CLDN2P57739 230 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 SNRPD1P62314 119 aaKnown RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 DNAJC3Q13217 504 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 MAPK8IP2Q13387 824 aaPredicted RBP16.61■□□□□ 0.25
VPS29-207ENST00000549970 DHRS13Q6UX07 377 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 TMC6Q7Z403 805 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 DNAAF5Q86Y56 855 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 PLPP6Q8IY26 295 aa16.61■□□□□ 0.25
VPS29-207ENST00000549970 NETO2Q8NC67 525 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms