RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 KLHL15Q96M94 604 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 SDF4Q9BRK5 362 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 BRF2Q9HAW0 419 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 ERVK-5Q9HDB9 667 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 PDGFCQ9NRA1 345 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 PPP1R14DQ9NXH3 145 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 KLHL13Q9P2N7 655 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 PIAS3Q9Y6X2 628 aa4.42□□□□□ -1.7
VPS29-205ENST00000548539 C17orf113A0A1B0GUU1 675 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 A6NCN8 305 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 NPIPB15A6NHN6 443 aaPredicted RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 F5H0A9 414 aaPredicted RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 TGFB1I1O43294 461 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 UGDHO60701 494 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 TACC1O75410 805 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 IL1AP01583 271 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 HLA-DQA2P01906 255 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 CENPBP07199 599 aaPredicted RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 SPARCP09486 303 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 HSPA1AP0DMV8 641 aaKnown RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 HSPA1BP0DMV9 641 aaKnown RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 TFEBP19484 476 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 CHRNA5P30532 468 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 MAPK4P31152 587 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 CIITAP33076 1130 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 ABCD1P33897 745 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 RPS3AP61247 264 aaKnown RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 TOMM20Q15388 145 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 SNX30Q5VWJ9 437 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 TTLL5Q6EMB2 1281 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 C17orf99Q6UX52 265 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 LRIG3Q6UXM1 1119 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 NEK10Q6ZWH5 1172 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 CPXM2Q8N436 756 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 C8orf58Q8NAV2 365 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 ZNF398Q8TD17 642 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 NOC3LQ8WTT2 800 aaKnown RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 KLHL29Q96CT2 875 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 ZNF419Q96HQ0 510 aaPredicted RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 PIP5K1AQ99755 562 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 SH2D3AQ9BRG2 576 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 RANBP17Q9H2T7 1088 aaKnown RBP4.41□□□□□ -1.7
VPS29-205ENST00000548539 AAMDCQ9H7C9 122 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 SNTG1Q9NSN8 517 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 LRP12Q9Y561 859 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 PSAT1Q9Y617 370 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 KDM3AQ9Y4C1 1321 aa4.41□□□□□ -1.7
VPS29-205ENST00000548539 ANKRD18BA2A2Z9 1011 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 C2CD4BA6NLJ0 364 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 IFNL4K9M1U5 179 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 DOK2O60496 412 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 USP12O75317 370 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 TIPRLO75663 272 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 DDAH2O95865 285 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 CLEC3BP05452 202 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 GALTP07902 379 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 EDN2P20800 178 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 EPHB2P29323 1055 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 ICAM3P32942 547 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 CPA2P48052 419 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 EFNA5P52803 228 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 PDE1CQ14123 709 aaPredicted RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 ME3Q16798 604 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 EDRF1Q3B7T1 1238 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 TMEM268Q5VZI3 342 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 FAM205BPQ63HN1 556 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 KRTAP5-1Q6L8H4 278 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 MIS18BP1Q6P0N0 1132 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 INO80CQ6PI98 192 aaPredicted RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 IL20RBQ6UXL0 311 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 ZNF813Q6ZN06 617 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 ZNF66Q6ZN08 573 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 FASTKD5Q7L8L6 764 aaKnown RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 RRM2BQ7LG56 351 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 YTHDF3Q7Z739 585 aaKnown RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 PXKQ7Z7A4 578 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 FAM160B2Q86V87 743 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 SAMD14Q8IZD0 417 aaPredicted RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 NGEFQ8N5V2 710 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 ETNPPLQ8TBG4 499 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 GDPD5Q8WTR4 605 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 SAAL1Q96ER3 474 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 PERPQ96FX8 193 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 NEUROD6Q96NK8 337 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 NR1H4Q96RI1 486 aaPredicted RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 ITPAQ9BY32 194 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 HIPK3Q9H422 1215 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 ENTPD7Q9NQZ7 604 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 BABAM1Q9NWV8 329 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 WWOXQ9NZC7 414 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 TBC1D14Q9P2M4 693 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 HSPB7Q9UBY9 170 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 CDH22Q9UJ99 828 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 UTS2RQ9UKP6 389 aa4.4□□□□□ -1.71
VPS29-205ENST00000548539 LAS1LQ9Y4W2 734 aaKnown RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 TDRD9Q8NDG6 1382 aaKnown RBP4.4□□□□□ -1.71
VPS29-205ENST00000548539 DPPA5A6NC42 116 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 TMEM247A6NEH6 219 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 RHODO00212 210 aa4.39□□□□□ -1.71
VPS29-205ENST00000548539 PPEF2O14830 753 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms