RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 DCP2Q8IU60 420 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 EID2Q8N6I1 236 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 AOPEPQ8N6M6 819 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 CASKIN2Q8WXE0 1202 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 ARHGEF2Q92974 986 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 RAB7BQ96AH8 199 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 VCPIP1Q96JH7 1222 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 CNDP2Q96KP4 475 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 EPAS1Q99814 870 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 BPIFA3Q9BQP9 254 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 CNPY3Q9BT09 278 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 CCDC86Q9H6F5 360 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 CATSPERBQ9H7T0 1116 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 KLHL11Q9NVR0 708 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 TOR4AQ9NXH8 423 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 HECAQ9UBI9 543 aaPredicted RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 DNAI1Q9UI46 699 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 FCF1Q9Y324 198 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 WASF2Q9Y6W5 498 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 DMXL1Q9Y485 3027 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 KNL1Q8NG31 2342 aa9.54□□□□□ -0.88
YBX3-218ENST00000546298 TNRC6BQ9UPQ9 1833 aaKnown RBP9.54□□□□□ -0.88
YBX3-218ENST00000546298 NUMA1Q14980 2115 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 MUC22E2RYF6 1773 aaPredicted RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 SRRM3A6NNA2 597 aaPredicted RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 EIF3CLB5ME19 914 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 FAM72CH0Y354 149 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 NEMP1O14524 444 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 TSPAN6O43657 245 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 BUB1O43683 1085 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 KDELR3O43731 214 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 AP1G1O43747 822 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ZNF821O75541 412 aaPredicted RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 GSRP00390 522 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 THEGLP0DJG4 465 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ADRB3P13945 408 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 PRLRP16471 622 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 HTR7P34969 479 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ACVRL1P37023 503 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 YBEYP58557 167 aaPredicted RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 SGCGQ13326 291 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ILKQ13418 452 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ZNF284Q2VY69 593 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 MYLK3Q32MK0 819 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ANO6Q4KMQ2 910 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 RAB6CQ53S08 254 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 FAM72AQ5TYM5 149 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 FAM72DQ6L9T8 149 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 APTXQ7Z2E3 356 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 FAM72BQ86X60 149 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 SPATS2Q86XZ4 545 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 MCOLN2Q8IZK6 566 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 CCDC185Q8N715 623 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 RTL3Q8N8U3 475 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 TMEM145Q8NBT3 493 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 OR2AP1Q8NGE2 309 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ARHGEF26Q96DR7 871 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 MCEEQ96PE7 176 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 EIF3CQ99613 913 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 OSBPL1AQ9BXW6 950 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 TM6SF2Q9BZW4 377 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 RAB6CQ9H0N0 254 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 ZDHHC6Q9H6R6 413 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 RTN4Q9NQC3 1192 aaKnown RBP9.53□□□□□ -0.88
YBX3-218ENST00000546298 PARVAQ9NVD7 372 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 HS3ST3A1Q9Y663 406 aa9.53□□□□□ -0.88
YBX3-218ENST00000546298 TCRBV5S1A1TA0A578 114 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 C16orf96A6NNT2 1141 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 A6NNZ2 444 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 WASH4PA8MWX3 477 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 KRIT1O00522 736 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 FGF10O15520 208 aaPredicted RBP9.52□□□□□ -0.89
YBX3-218ENST00000546298 CCP110O43303 1012 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 CREB3O43889 395 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 RFPL3O75679 317 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 CD160O95971 181 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 ATP1A3P13637 1013 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 CKMT2P17540 419 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 HNF1BP35680 557 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 ZNF165P49910 485 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 TPM4P67936 248 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 BNIP3Q12983 259 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 SMAD1Q15797 465 aaKnown RBP9.52□□□□□ -0.89
YBX3-218ENST00000546298 PARP15Q460N3 678 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 TMEM259Q4ZIN3 620 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 INO80DQ53TQ3 878 aaPredicted RBP9.52□□□□□ -0.89
YBX3-218ENST00000546298 ZNF805Q5CZA5 627 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 SFMBT2Q5VUG0 894 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 DHRS13Q6UX07 377 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 IRF2BP2Q7Z5L9 587 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 PROSER1Q86XN7 944 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 PDCD7Q8N8D1 485 aaKnown RBP9.52□□□□□ -0.89
YBX3-218ENST00000546298 KLK6Q92876 244 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 IFT43Q96FT9 208 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 GDAP1L1Q96MZ0 367 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 MYOCQ99972 504 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 NCAPGQ9BPX3 1015 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 CALN1Q9BXU9 219 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 SLC17A9Q9BYT1 436 aa9.52□□□□□ -0.89
YBX3-218ENST00000546298 EDEM3Q9BZQ6 932 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms