RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 CCDC167Q9P0B6 97 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 MATN2O00339 956 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 ITKQ08881 620 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 SNAPC2Q13487 334 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CYLC2Q14093 348 aaPredicted RBP15.26■□□□□ 0.03
USP28-214ENST00000545540 FSCBQ5H9T9 825 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 OLFML2BQ68BL8 750 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 ZNF470Q6ECI4 717 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CNSTQ6PJW8 725 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 TFAP2DQ7Z6R9 452 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 TAC4Q86UU9 113 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 FAM35AQ86V20 835 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 RYBPQ8N488 228 aaPredicted RBP15.26■□□□□ 0.03
USP28-214ENST00000545540 APBB2Q92870 758 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CASS4Q9NQ75 786 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 CPA4Q9UI42 421 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 FBXW11Q9UKB1 542 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 GJB3O75712 270 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 EPHX2P34913 555 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 SCNN1GP51170 649 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 TAS2R39P59534 338 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 PTPRCAPQ14761 206 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 KBTBD6Q86V97 674 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 KYQ8NBH2 561 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 DCUN1D1Q96GG9 259 aa15.26■□□□□ 0.03
USP28-214ENST00000545540 OR51F1A6NGY5 319 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 HDAC3O15379 428 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 OR4Q2P0C623 313 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 ARMC3Q5W041 872 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 AP1ARQ63HQ0 302 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 CLEC6AQ6EIG7 209 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 NT5C3BQ969T7 300 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 RPL10LQ96L21 214 aaKnown RBP15.25■□□□□ 0.03
USP28-214ENST00000545540 KLHL32Q96NJ5 620 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 PKP2Q99959 881 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 SH3GL3Q99963 347 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 NAT9Q9BTE0 207 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GBA3Q9H227 469 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 WDR41Q9HAD4 459 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 DDX18Q9NVP1 670 aaKnown RBP15.25■□□□□ 0.03
USP28-214ENST00000545540 PTGDR2Q9Y5Y4 395 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 hCG_2014768A0A024R1R8 64 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 C15orf38-AP3S2A0A0A6YYH1 394 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 CDK7P50613 346 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 CYTH1Q15438 398 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 KCTD11Q693B1 232 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 AEBP2Q6ZN18 517 aaPredicted RBP15.25■□□□□ 0.03
USP28-214ENST00000545540 ARPINQ7Z6K5 226 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GRIN3AQ8TCU5 1115 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GPR152Q8TDT2 470 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 ATP6V1E2Q96A05 226 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 TSNARE1Q96NA8 513 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 SPATA16Q9BXB7 569 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GRIP2Q9C0E4 1043 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 FBRSL1Q9HCM7 1045 aaKnown RBP15.25■□□□□ 0.03
USP28-214ENST00000545540 TMLHEQ9NVH6 421 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GDAP2Q9NXN4 497 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 PDP2Q9P2J9 529 aa15.25■□□□□ 0.03
USP28-214ENST00000545540 GLDCP23378 1020 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 SATB1Q01826 763 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 PPIDQ08752 370 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 INSCQ1MX18 579 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 CYS1Q717R9 158 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 CLEC14AQ86T13 490 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 PQLC1Q8N2U9 271 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 TXNDC5Q8NBS9 432 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 EMID1Q96A84 441 aaPredicted RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 TEKT5Q96M29 485 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 LRGUKQ96M69 825 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 KLHL5Q96PQ7 755 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 NR1H4Q96RI1 486 aaPredicted RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 TRPV6Q9H1D0 765 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 EIF2B3Q9NR50 452 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 FLRT1Q9NZU1 646 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 COPG1Q9Y678 874 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 FAM95CA0A1B0GW59 222 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 SLC4A1P02730 911 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 SLC1A2P43004 574 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 CDH13P55290 713 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 CDKL1Q00532 357 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 MFSD10Q14728 455 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.24■□□□□ 0.03
USP28-214ENST00000545540 TSTD2Q5T7W7 516 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 ST13P4Q8IZP2 240 aaPredicted RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 HEXDCQ8WVB3 486 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 POMKQ9H5K3 350 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 SORCS3Q9UPU3 1222 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 RGSL1A5PLK6 1076 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 PPP6CO00743 305 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 FBXO21O94952 628 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 SNUPNO95149 360 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 PIRTP0C851 137 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 RAB27AP51159 221 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 ROR2Q01974 943 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 ANO4Q32M45 955 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 BNC2Q6ZN30 1099 aaPredicted RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 AMIGO2Q86SJ2 522 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 PRPF18Q99633 342 aaKnown RBP15.24■□□□□ 0.03
USP28-214ENST00000545540 C1QTNF1Q9BXJ1 281 aa15.24■□□□□ 0.03
USP28-214ENST00000545540 GTF2IRD1Q9UHL9 959 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms