RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 IP6K2Q9UHH9 426 aa12.04□□□□□ -0.48
HDAC4-216ENST00000544989 SSU72P8A0A1W2PR75 194 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ARHGAP42A6NI28 874 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 RASA4BC9J798 803 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 K7ERQ8 282 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 MYO1FO00160 1098 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 RASA4O43374 803 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SMAD6O43541 496 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 LATO43561 262 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 RNGTTO60942 597 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 POP4O95707 220 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 CYP1A2P05177 515 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 GLDCP23378 1020 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ITGB7P26010 798 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 MIPP30301 263 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ACVRL1P37023 503 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 NOVA1P51513 510 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 DNA2P51530 1060 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 C21orf59P57076 290 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 CNTN1Q12860 1018 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 OVGP1Q12889 678 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SERINC3Q13530 473 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 GRM3Q14832 879 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SUZ12Q15022 739 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SETMARQ53H47 684 aaPredicted RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 CCDC122Q5T0U0 273 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 AGBL4Q5VU57 503 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 DPY19L3Q6ZPD9 716 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ERN2Q76MJ5 926 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 CNGA4Q8IV77 575 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 VSTM4Q8IW00 320 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 NIPA2Q8N8Q9 360 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 RAB7BQ96AH8 199 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ARHGEF26Q96DR7 871 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ANP32EQ9BTT0 268 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SNRNP25Q9BV90 132 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 DHX35Q9H5Z1 703 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 NDFIP2Q9NV92 336 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 UVRAGQ9P2Y5 699 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 PCSK1NQ9UHG2 260 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SARDHQ9UL12 918 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ANKRD6Q9Y2G4 727 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 PCDHGB2Q9Y5G2 931 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 DMXL2Q8TDJ6 3036 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 LAMA5O15230 3695 aa12.03□□□□□ -0.48
HDAC4-216ENST00000544989 SMG1Q96Q15 3661 aaKnown RBP12.03□□□□□ -0.48
HDAC4-216ENST00000544989 ASCC3Q8N3C0 2202 aaKnown RBP12.02□□□□□ -0.48
HDAC4-216ENST00000544989 CHD5Q8TDI0 1954 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 PCDH15Q96QU1 1955 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 A0A087X0T9 212 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 C10orf142B7Z368 130 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 H3BRJ5 948 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 VILLO15195 856 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 YKT6O15498 198 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 BUB1O43683 1085 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 LRCH4O75427 683 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ZNF821O75541 412 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 LEFTY1O75610 366 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 GJB3O75712 270 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 CTSLP07711 333 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 FAM228BP0C875 321 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 CD38P28907 300 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ARL4AP40617 200 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 CSNK1EP49674 416 aaKnown RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 CCNHP51946 323 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 NEK3P51956 506 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ZNF252P-AS1Q0IIN9 211 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 MAPK8IP2Q13387 824 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 DPYSL2Q16555 572 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 SLC18A3Q16572 532 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 HADHQ16836 314 aaKnown RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 INAVAQ3KP66 663 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ARSIQ5FYB1 569 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 TMCO4Q5TGY1 634 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 NAPEPLDQ6IQ20 393 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 PSAPL1Q6NUJ1 521 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 RFX8Q6ZV50 586 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 PIP4P1Q86T03 277 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 IQCHQ86VS3 1027 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 OXR1Q8N573 874 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 OR2AP1Q8NGE2 309 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 FAM174AQ8TBP5 190 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 GRIN3AQ8TCU5 1115 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 TEKT4Q8WW24 435 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 CTNNBL1Q8WYA6 563 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 SERAC1Q96JX3 654 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 GDAP1L1Q96MZ0 367 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 NUP85Q9BW27 656 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 THAP2Q9H0W7 228 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 TNKS2Q9H2K2 1166 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 GAREM1Q9H706 876 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 AASDHPPTQ9NRN7 309 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ARHGAP20Q9P2F6 1191 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 HECAQ9UBI9 543 aaPredicted RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 ANAPC7Q9UJX3 599 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 FCF1Q9Y324 198 aaKnown RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 IGF2RP11717 2491 aa12.02□□□□□ -0.49
HDAC4-216ENST00000544989 NYNRINQ9P2P1 1898 aaKnown RBP12.02□□□□□ -0.49
HDAC4-216ENST00000544989 A0A1B0GVT2 93 aa12.01□□□□□ -0.49
HDAC4-216ENST00000544989 AP1G1O43747 822 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms