RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PCDHA3Q9Y5H8 950 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 A2MP01023 1474 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 A0A1W2PPW3 197 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 NCF1BA6NI72 391 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 NCF1CA8MVU1 366 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 FAM47E-STBD1D6RA91 191 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 BCKDKO14874 412 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RPLP0P05388 317 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 CLTBP09497 229 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 NCF1P14598 390 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 SLC2A4P14672 509 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RPS2P15880 293 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 CAPZA2P47755 286 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CDH15P55291 814 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 USP17L6PQ6QN14 398 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 TICAM1Q8IUC6 712 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RIOX2Q8IUF8 465 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 IL17REQ8NFR9 667 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 BAP1Q92560 729 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ZNF486Q96H40 463 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 NPAS2Q99743 824 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SLA2Q9H6Q3 261 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SLC39A1Q9NY26 324 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CBY1Q9Y3M2 126 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 N6AMT1Q9Y5N5 214 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 YTHDC2Q9H6S0 1430 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 KIAA0586Q9BVV6 1533 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CHP2O43745 196 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 NARSO43776 548 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 TGDSO95455 350 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 AFF1P51825 1210 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 AP3M2P53677 418 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RPP38P78345 283 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 PRKCQQ04759 706 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 DDX39BQ13838 428 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 GALNT3Q14435 633 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CLCA4Q14CN2 919 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PCSK7Q16549 785 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CCDC58Q4VC31 144 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ARHGAP15Q53QZ3 475 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CIAPIN1Q6FI81 312 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 C6orf89Q6UWU4 347 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SLC37A3Q8NCC5 494 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 LILRB4Q8NHJ6 448 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 TRPM4Q8TD43 1214 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 TTYH2Q9BSA4 534 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PCDHGA11Q9Y5H2 935 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 KDM5CP41229 1560 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 M0R036 132 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SGCEO43556 437 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PROSCO94903 275 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RARBP10826 455 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PRKAR2AP13861 404 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 GPD1P21695 349 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PSMA1P25786 263 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 CDKL1Q00532 357 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CHRNA2Q15822 529 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PKN1Q16512 942 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ATP13A4Q4VNC1 1196 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 USPL1Q5W0Q7 1092 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 DNAJC14Q6Y2X3 702 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 MSANTD1Q6ZTZ1 278 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ENDOVQ8N8Q3 282 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 BPIFB1Q8TDL5 484 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 TNFAIP8L1Q8WVP5 186 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ARL5BQ96KC2 179 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CPNE1Q99829 537 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 REEP2Q9BRK0 252 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CD93Q9NPY3 652 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SACM1LQ9NTJ5 587 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 WWOXQ9NZC7 414 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 AKT3Q9Y243 479 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 OR2B3O76000 313 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 FBXO21O94952 628 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 KCNH1O95259 989 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PRAMEF1O95521 474 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 APOC3P02656 99 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 NR3C2P08235 984 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 CD40LGP29965 261 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 HOXA13P31271 388 aaPredicted RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 SLC7A2P52569 658 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SULT2A1Q06520 285 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 KLF10Q13118 480 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ZNF235Q14590 738 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 TPRG1LQ5T0D9 272 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 MMAAQ8IVH4 418 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 ZNF615Q8N8J6 731 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 GALNT11Q8NCW6 608 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 ISOC1Q96CN7 298 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 FRMD6Q96NE9 622 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 FERD3LQ96RJ6 166 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 SIK2Q9H0K1 926 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 GANQ9H2C0 597 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 POMKQ9H5K3 350 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 PTBP2Q9UKA9 531 aaKnown RBP8.85□□□□□ -0.99
YBX3-208ENST00000540447 GRIP1Q9Y3R0 1128 aa8.85□□□□□ -0.99
YBX3-208ENST00000540447 RCCD1A6NED2 376 aa8.84□□□□□ -0.99
YBX3-208ENST00000540447 EEF2KO00418 725 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 AKAP8O43823 692 aaKnown RBP8.84□□□□□ -0.99
YBX3-208ENST00000540447 TRIM3O75382 744 aaPredicted RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms