RNA–Protein interactions for RNA: ENST00000538834.5

CD9-208, Transcript of CD9 molecule, human

TSL 5

Gene CD9, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD9-208	ENST00000538834	LHX3	Q9UBR4	397 aa		13.96	□□□□□ -0.17
CD9-208	ENST00000538834	FCF1	Q9Y324	198 aa	Known RBP	13.96	□□□□□ -0.17
CD9-208	ENST00000538834	REXO2	Q9Y3B8	237 aa	Known RBP	13.96	□□□□□ -0.17
CD9-208	ENST00000538834	SLCO1B1	Q9Y6L6	691 aa		13.96	□□□□□ -0.17
CD9-208	ENST00000538834	SPTBN2	O15020	2390 aa		13.96	□□□□□ -0.18
CD9-208	ENST00000538834		A0A0A6YYK5	440 aa	Predicted RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	C3orf70	A6NLC5	250 aa	Predicted RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834		H3BRJ5	948 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834		J3KR12	359 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	SLC30A4	O14863	429 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	GJB3	O75712	270 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	IL1B	P01584	269 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	PRNP	P04156	253 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	CD48	P09326	243 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	AMPD1	P23109	780 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	PSMD8	P48556	350 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	PAPOLA	P51003	745 aa	Known RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	CCNH	P51946	323 aa	Predicted RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	BNC1	Q01954	994 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	CNTN1	Q12860	1018 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	DPYSL3	Q14195	570 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	PPP6R3	Q5H9R7	873 aa	Predicted RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	WDR45B	Q5MNZ6	344 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	LRRC38	Q5VT99	294 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	KIAA0895L	Q68EN5	471 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	ARMCX6	Q7L4S7	300 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	RABEPK	Q7Z6M1	372 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	FAM124A	Q86V42	546 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	TMTC1	Q8IUR5	882 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	HDDC3	Q8N4P3	179 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	OR2AP1	Q8NGE2	309 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	OR2T34	Q8NGX1	318 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	NETO1	Q8TDF5	533 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	HINFP	Q9BQA5	517 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	HEPH	Q9BQS7	1158 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	ANP32E	Q9BTT0	268 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	CPEB1	Q9BZB8	566 aa	Known RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	TNKS2	Q9H2K2	1166 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	ZWILCH	Q9H900	591 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	IMPACT	Q9P2X3	320 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	IL36A	Q9UHA7	158 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	TPX2	Q9ULW0	747 aa	Known RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	HPCAL4	Q9UM19	191 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	SLC6A14	Q9UN76	642 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	NCKAP1	Q9Y2A7	1128 aa		13.95	□□□□□ -0.18
CD9-208	ENST00000538834	EPN1	Q9Y6I3	576 aa	Predicted RBP	13.95	□□□□□ -0.18
CD9-208	ENST00000538834	RCCD1	A6NED2	376 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	ARHGAP42	A6NI28	874 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	C1QTNF3-AMACR	E9PGA6	284 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	KHNYN	O15037	678 aa	Known RBP	13.94	□□□□□ -0.18
CD9-208	ENST00000538834	LEFTY1	O75610	366 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	TMCC1	O94876	653 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	NDUFA10	O95299	355 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	MAOB	P27338	520 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	MAGEA1	P43355	309 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	CSNK1D	P48730	415 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	IL10RB	Q08334	325 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	PAFAH1B3	Q15102	231 aa	Known RBP	13.94	□□□□□ -0.18
CD9-208	ENST00000538834	PDK2	Q15119	407 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	TAZ	Q16635	292 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	HADH	Q16836	314 aa	Known RBP	13.94	□□□□□ -0.18
CD9-208	ENST00000538834	ARSI	Q5FYB1	569 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	SYCP2L	Q5T4T6	812 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	NCEH1	Q6PIU2	408 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	RAD9B	Q6WBX8	426 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	PCDH19	Q8TAB3	1148 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	CCDC114	Q96M63	670 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	ZNF670	Q9BS34	389 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	SALL4	Q9UJQ4	1053 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834	PCDHA13	Q9Y5I0	950 aa		13.94	□□□□□ -0.18
CD9-208	ENST00000538834		A0A1B0GTW7	788 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834		A0A1W2PPC4	97 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	BTNL10	A8MVZ5	291 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	PLK4	O00444	970 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	PJA2	O43164	708 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	SPINT1	O43278	529 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	BUB1	O43683	1085 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	MAFK	O60675	156 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	RNASEH2A	O75792	299 aa	Known RBP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	POP4	O95707	220 aa	Known RBP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	KRT7	P08729	469 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	ITGB7	P26010	798 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	CD27	P26842	260 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	ARL4A	P40617	200 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	SLC1A1	P43005	524 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	SNRPD1	P62314	119 aa	Known RBP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	MMRN1	Q13201	1228 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	MYLK3	Q32MK0	819 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	TRIM61	Q5EBN2	209 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	NEK5	Q6P3R8	708 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	ARHGAP36	Q6ZRI8	547 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	TRIM69	Q86WT6	500 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	PQLC3	Q8N755	202 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	SPOCK2	Q92563	424 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	HSPH1	Q92598	858 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	FATE1	Q969F0	183 aa		13.93	□□□□□ -0.18
CD9-208	ENST00000538834	CELF6	Q96J87	481 aa	Known RBP	13.93	□□□□□ -0.18
CD9-208	ENST00000538834	NSMCE3	Q96MG7	304 aa		13.93	□□□□□ -0.18

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