RNA–Protein interactions for RNA: ENST00000538548.5

SFSWAP-207, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 2,636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-207ENST00000538548 ARMC1Q9NVT9 282 aa18.85■□□□□ 0.61
SFSWAP-207ENST00000538548 FAM32AQ9Y421 112 aaKnown RBP18.85■□□□□ 0.61
SFSWAP-207ENST00000538548 TRIM17Q9Y577 477 aa18.85■□□□□ 0.61
SFSWAP-207ENST00000538548 PRKCBP05771 671 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 SBK3P0C264 359 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 PSMB4P28070 264 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 GJA8P48165 433 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 TMED10P49755 219 aaKnown RBP18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 OSTNP61366 133 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 FRG1Q14331 258 aaKnown RBP18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 COLGALT2Q8IYK4 626 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 PELI3Q8N2H9 469 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 TMEM39BQ9GZU3 492 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 UPF3AQ9H1J1 476 aaKnown RBP18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 ARMC7Q9H6L4 198 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 GID8Q9NWU2 228 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 TMEM9Q9P0T7 183 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 ANKRD6Q9Y2G4 727 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 RIPK3Q9Y572 518 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 ANK1P16157 1881 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 RBM47A0AV96 593 aaKnown RBP18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 DLGAP1O14490 977 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 SNAP91O60641 907 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 EGFRP00533 1210 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 ABCG1P45844 678 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 RGS7P49802 495 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 CSE1LP55060 971 aaKnown RBP18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 SLC6A3Q01959 620 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 BNIP3Q12983 259 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 RGS21Q2M5E4 152 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 ANKRD26P1Q6NSI1 321 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 EEPD1Q7L9B9 569 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 KDM1BQ8NB78 822 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 KHSRPQ92945 711 aaKnown RBP eCLIP18.84■□□□□ 0.615e-9■■□□□ 13.4
SFSWAP-207ENST00000538548 TSNARE1Q96NA8 513 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 VRTNQ9H8Y1 702 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 AP4E1Q9UPM8 1137 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 SLC30A1Q9Y6M5 507 aa18.84■□□□□ 0.61
SFSWAP-207ENST00000538548 DDHD2O94830 711 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 PFKMP08237 780 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 F7P08709 466 aaPredicted RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TFE3P19532 575 aaPredicted RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 GTF2A2P52657 109 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 GALNT2Q10471 571 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 MERTKQ12866 999 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 ZBTB17Q13105 803 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 DGKDQ16760 1214 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 SAMD4BQ5PRF9 694 aaKnown RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 MAP1SQ66K74 1059 aaPredicted RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 REP15Q6BDI9 236 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 MPZL3Q6UWV2 235 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TMEM26Q6ZUK4 368 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TMEM135Q86UB9 458 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 CBR4Q8N4T8 237 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 ANKRD52Q8NB46 1076 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TRUB1Q8WWH5 349 aaKnown RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TANKQ92844 425 aa18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 TDRD1Q9BXT4 1180 aaKnown RBP18.83■□□□□ 0.61
SFSWAP-207ENST00000538548 SDHDO14521 159 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 DGKZQ13574 1117 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 TARBP2Q15633 366 aaKnown RBP18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 DHFR2Q86XF0 187 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 SIX6OS1Q8N1H7 587 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 VPS39Q96JC1 886 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 KCTD15Q96SI1 283 aaPredicted RBP18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 C1QTNF1Q9BXJ1 281 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 FTHL17Q9BXU8 183 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 KIAA1522Q9P206 1035 aaPredicted RBP18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 TLK1Q9UKI8 766 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 B3GNT3Q9Y2A9 372 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 MFHAS1Q9Y4C4 1052 aa18.83■□□□□ 0.6
SFSWAP-207ENST00000538548 MGAMO43451 1857 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ZCWPW2A0A1B0GU75 182 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ZNF839A8K0R7 811 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 HSPA8P11142 646 aaKnown RBP18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 EPHX2P34913 555 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 HADHAP40939 763 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 NR1D2Q14995 579 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 SLC36A3Q495N2 470 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 OR2T34Q8NGX1 318 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 OR2T3Q8NH03 318 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 STYXQ8WUJ0 223 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 P2RY11Q96G91 374 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 PGLYRP2Q96PD5 576 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 MAGEB5Q9BZ81 275 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 POLR1BQ9H9Y6 1135 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 TRPC7Q9HCX4 862 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ERGIC3Q9Y282 383 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 SAC3D1A6NKF1 404 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 IL18RAPO95256 599 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ITGB3P05106 788 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 CSRP3P50461 194 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 SP2Q02086 613 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 BCL2A1Q16548 175 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ANO4Q32M45 955 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 LRRC8EQ6NSJ5 796 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ZBTB8OSQ8IWT0 167 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 RNF169Q8NCN4 708 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 ACVR1CQ8NER5 493 aa18.82■□□□□ 0.6
SFSWAP-207ENST00000538548 CANT1Q8WVQ1 401 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms