RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	BECN2	A8MW95	431 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TMEM114	B3SHH9	223 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	PRRT4	C9JH25	899 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	PLOD2	O00469	737 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	XPO1	O14980	1071 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	BET1	O15155	118 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TLR5	O60602	858 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TMCC2	O75069	709 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	APBB3	O95704	486 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	FAM107A	O95990	144 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	HMGN1	P05114	100 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	RPS17	P08708	135 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF3	P17036	446 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CHRM3	P20309	590 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TKT	P29401	623 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	MTHFR	P42898	656 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	HAAO	P46952	286 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	POLR2F	P61218	127 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CCZ1B	P86790	482 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CCZ1	P86791	482 aa	Predicted RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	FMO1	Q01740	532 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CETN1	Q12798	172 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	BNIP1	Q12981	228 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CYLC2	Q14093	348 aa	Predicted RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TRIM14	Q14142	442 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	KPNB1	Q14974	876 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	NR1D2	Q14995	579 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	MOG	Q16653	247 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	PRR16	Q569H4	304 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TMTC4	Q5T4D3	741 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ALS2CL	Q60I27	953 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	HACE1	Q8IYU2	909 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	LINS1	Q8NG48	757 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CAGE1	Q8TC20	777 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ACTRT2	Q8TDY3	377 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	STARD8	Q92502	1023 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	PHKB	Q93100	1093 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	HAUS1	Q96CS2	278 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	RMDN1	Q96DB5	314 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	STAMBPL1	Q96FJ0	436 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	FBXL20	Q96IG2	436 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	NSMCE3	Q96MG7	304 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ZNF570	Q96NI8	536 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TSGA13	Q96PP4	275 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	PRAM1	Q96QH2	718 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	AGAP2	Q99490	1192 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	GAL3ST1	Q99999	423 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	GPATCH1	Q9BRR8	931 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ACTRT3	Q9BYD9	372 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	SHCBP1L	Q9BZQ2	653 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TTYH3	Q9C0H2	523 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ALG13	Q9NP73	1137 aa	Known RBP	5.81	□□□□□ -1.48
CD44-231	ENST00000531110	FANCF	Q9NPI8	374 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	DIABLO	Q9NR28	239 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ZSCAN32	Q9NX65	697 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	FOXJ2	Q9P0K8	574 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CPNE7	Q9UBL6	633 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	ANAPC5	Q9UJX4	755 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	RIMKLB	Q9ULI2	386 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	VANGL2	Q9ULK5	521 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	EXOC7	Q9UPT5	735 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TBC1D30	Q9Y2I9	924 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	TEX14	Q8IWB6	1497 aa		5.81	□□□□□ -1.48
CD44-231	ENST00000531110	CFAP74	Q9C0B2	1584 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ADGRA2	Q96PE1	1338 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	EHBP1L1	Q8N3D4	1523 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	KDM5D	Q9BY66	1539 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CCDC141	Q6ZP82	1450 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ANO9	A1A5B4	782 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	C5orf60	A6NFR6	353 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	AP3B1	O00203	1094 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	KLHL41	O60662	606 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	NXPH3	O95157	252 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ALOX5	P09917	674 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	GSTT2	P0CG29	244 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	GSTT2B	P0CG30	244 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CALM1	P0DP23	149 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CALM2	P0DP24	149 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CALM3	P0DP25	149 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	POLR2C	P19387	275 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	NFKBIA	P25963	317 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CRABP2	P29373	138 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	IFNAR2	P48551	515 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	HSPA13	P48723	471 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	NR2C2	P49116	596 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	RARRES1	P49788	294 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	HNRNPM	P52272	730 aa	Known RBP eCLIP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	LILRA4	P59901	499 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ELF3	P78545	371 aa	Predicted RBP	5.8	□□□□□ -1.48
CD44-231	ENST00000531110	HPCA	P84074	193 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	GBE1	Q04446	702 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	MYO1E	Q12965	1108 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CUL4A	Q13619	759 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ANKRD1	Q15327	319 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	TXNRD1	Q16881	649 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	SUPT20HL1	Q3ZLR7	823 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	FUT11	Q495W5	492 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	CDON	Q4KMG0	1287 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ALF	Q53S48	1182 aa		5.8	□□□□□ -1.48
CD44-231	ENST00000531110	ODF2	Q5BJF6	829 aa		5.8	□□□□□ -1.48

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