RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 PDK3Q15120 406 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 FAM43BQ6ZT52 329 aaPredicted RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 ICA1LQ8NDH6 482 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 RCN3Q96D15 328 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 CDRT15Q96T59 188 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 SERPINI1Q99574 410 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 WDCPQ9H6R7 721 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 NSMCE4AQ9NXX6 385 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 C6orf203Q9P0P8 240 aaPredicted RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 RUVBL2Q9Y230 463 aaKnown RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 TREHO43280 583 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 FOLH1Q04609 750 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 SLC12A1Q13621 1099 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 CYLC2Q14093 348 aaPredicted RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 ZNF423Q2M1K9 1284 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 PIGGQ5H8A4 983 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 USP50Q70EL3 339 aaPredicted RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 SDCCAG8Q86SQ7 713 aaPredicted RBP19.54■□□□□ 0.72
VPS28-213ENST00000530983 SLC41A1Q8IVJ1 513 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 FAM81AQ8TBF8 368 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 SCYL1Q96KG9 808 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 DTNAQ9Y4J8 743 aa19.54■□□□□ 0.72
VPS28-213ENST00000530983 SLC22A2O15244 555 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 DDHD2O94830 711 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 XRCC1P18887 633 aaPredicted RBP19.53■□□□□ 0.72
VPS28-213ENST00000530983 CXCR3P49682 368 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 PRKAA2P54646 552 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 GRB14Q14449 540 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 ZNF460Q14592 562 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 UGT2A3Q6UWM9 527 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 BNC2Q6ZN30 1099 aaPredicted RBP19.53■□□□□ 0.72
VPS28-213ENST00000530983 MFSD6LQ8IWD5 586 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 KLHDC8BQ8IXV7 354 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 SPATA22Q8NHS9 363 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 SENP8Q96LD8 212 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 TSNARE1Q96NA8 513 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 CATSPER2Q96P56 530 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 GCNAQ96QF7 691 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 VPS28Q9UK41 221 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 SLC4A7Q9Y6M7 1214 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 DNAH12Q6ZR08 3092 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 HHLA1C9JL84 531 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 PDLIM1O00151 329 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 TXNDC9O14530 226 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 CACNG3O60359 315 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 DLX3O60479 287 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 FAM163BP0C2L3 166 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 ETS2P15036 469 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 RANBP1P43487 201 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 PRPSAP1Q14558 356 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 LRRC23Q53EV4 343 aaPredicted RBP19.53■□□□□ 0.72
VPS28-213ENST00000530983 LDLRAD1Q5T700 205 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 LRRC8EQ6NSJ5 796 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 LCA5Q86VQ0 697 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 USP33Q8TEY7 942 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 DTNBP1Q96EV8 351 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 DCUN1D1Q96GG9 259 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 ZNF419Q96HQ0 510 aaPredicted RBP19.53■□□□□ 0.72
VPS28-213ENST00000530983 VCX3AQ9NNX9 186 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 XPR1Q9UBH6 696 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 VTI1BQ9UEU0 232 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 CDYLQ9Y232 598 aa19.53■□□□□ 0.72
VPS28-213ENST00000530983 TIMM13Q9Y5L4 95 aaPredicted RBP19.53■□□□□ 0.72
VPS28-213ENST00000530983 MEIS3P2A8K0S8 358 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 AP3B1O00203 1094 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 PGK1P00558 417 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 F9P00740 461 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 MSX2P35548 267 aaPredicted RBP19.52■□□□□ 0.72
VPS28-213ENST00000530983 DPP6P42658 865 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 CHN2P52757 468 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 CEACAM7Q14002 265 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 FLOT2Q14254 428 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 MFSD10Q14728 455 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 PM20D1Q6GTS8 502 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 ARHGAP36Q6ZRI8 547 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 LINC00523Q86TU6 105 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 CEP97Q8IW35 865 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 DENND6AQ8IWF6 608 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 NPLOC4Q8TAT6 608 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 STON2Q8WXE9 905 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 MARK4Q96L34 752 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 GPR78Q96P69 363 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 HAPLN3Q96S86 360 aa19.52■□□□□ 0.72
VPS28-213ENST00000530983 MT-CYBP00156 380 aaPredicted RBP19.52■□□□□ 0.71
VPS28-213ENST00000530983 MRPS22P82650 360 aaKnown RBP19.52■□□□□ 0.71
VPS28-213ENST00000530983 MPP1Q00013 466 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 CTBP1Q13363 440 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 TLR1Q15399 786 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 TSTD2Q5T7W7 516 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 TWF2Q6IBS0 349 aaKnown RBP19.52■□□□□ 0.71
VPS28-213ENST00000530983 PKN3Q6P5Z2 889 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 SETD3Q86TU7 594 aaPredicted RBP19.52■□□□□ 0.71
VPS28-213ENST00000530983 CNTN4Q8IWV2 1026 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 ITFG2Q969R8 447 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 FTHL17Q9BXU8 183 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 RHOBTB2Q9BYZ6 727 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 TSPYL2Q9H2G4 693 aaPredicted RBP19.52■□□□□ 0.71
VPS28-213ENST00000530983 ZBTB26Q9HCK0 441 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 RRN3Q9NYV6 651 aa19.52■□□□□ 0.71
VPS28-213ENST00000530983 ACOT9Q9Y305 439 aa19.52■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms