RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 FREM2Q5SZK8 3169 aa6.72□□□□□ -1.33
CD44-221ENST00000526000 ITPR1Q14643 2758 aa6.72□□□□□ -1.33
CD44-221ENST00000526000 MYLKQ15746 1914 aa6.72□□□□□ -1.33
CD44-221ENST00000526000 CELSR3Q9NYQ7 3312 aa6.71□□□□□ -1.33
CD44-221ENST00000526000 A6NNZ2 444 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 GOLGA8SH3BPF8 625 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 FOXN3O00409 490 aaPredicted RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 P4HA2O15460 535 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 SLC28A2O43868 658 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 MMP20O60882 483 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 CLDN11O75508 207 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 GCATO75600 419 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 TNFSF15O95150 251 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 PRNPP04156 253 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 CELA2BP08218 269 aaPredicted RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 HGFP14210 728 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 OR1E1P30953 314 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 NOS2P35228 1153 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 KRT9P35527 623 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 NUDT1P36639 197 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 ACVRL1P37023 503 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 HNRNPKP61978 463 aaKnown RBP eCLIP6.71□□□□□ -1.34
CD44-221ENST00000526000 SLC6A3Q01959 620 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 RHDQ02161 417 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 EIF2B5Q13144 721 aaKnown RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 TGIF1Q15583 401 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 PTPN20Q4JDL3 420 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 RAB6CQ53S08 254 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 CARD16Q5EG05 197 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 FAXCQ5TGI0 409 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 TTC39BQ5VTQ0 682 aaPredicted RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 TAF3Q5VWG9 929 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 C22orf39Q6P5X5 142 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 NYAP1Q6ZVC0 841 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 BEND5Q7L4P6 421 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 PRICKLE2Q7Z3G6 844 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 VPS36Q86VN1 386 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 JAMLQ86YT9 394 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 LSMEM2Q8N112 164 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 CACTIN-AS1Q8N1I8 211 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 LSM14AQ8ND56 463 aaKnown RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 ZNF548Q8NEK5 533 aaPredicted RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 TMIEQ8NEW7 156 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 GPT2Q8TD30 523 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 FAM131CQ96AQ9 280 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 PRR11Q96HE9 360 aaPredicted RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 CCDC114Q96M63 670 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 IL12RB2Q99665 862 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 HEPHQ9BQS7 1158 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 TRIM62Q9BVG3 475 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 RAB6CQ9H0N0 254 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 ASCL3Q9NQ33 180 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 THSD1Q9NS62 852 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP6.71□□□□□ -1.34
CD44-221ENST00000526000 NLGN3Q9NZ94 848 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 SIRPGQ9P1W8 387 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 DACH1Q9UI36 760 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 TPX2Q9ULW0 747 aaKnown RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 CNTN6Q9UQ52 1028 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 TBC1D30Q9Y2I9 924 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 ENTPD2Q9Y5L3 495 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 FADS3Q9Y5Q0 445 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 HS3ST3A1Q9Y663 406 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 WASF2Q9Y6W5 498 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 LAMA5O15230 3695 aa6.71□□□□□ -1.34
CD44-221ENST00000526000 GCN1Q92616 2671 aaKnown RBP6.71□□□□□ -1.34
CD44-221ENST00000526000 MUC22E2RYF6 1773 aaPredicted RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 DRGXA6NNA5 263 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 B8ZZF3 427 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ERVH48-1M5A8F1 160 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 KRIT1O00522 736 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 FPGTO14772 594 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ALOX15BO15296 676 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 PMM2O15305 246 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 EFSO43281 561 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 AQP9O43315 295 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 HSF2BPO75031 334 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ZNF821O75541 412 aaPredicted RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 CSF2P04141 144 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 C6P13671 934 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ADRB3P13945 408 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 PRKCSHP14314 528 aaPredicted RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 L1CAMP32004 1257 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ABL2P42684 1182 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 CCNHP51946 323 aaPredicted RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 NEK3P51956 506 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 RPS21P63220 83 aaKnown RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 CCL7P80098 99 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ATP11AP98196 1134 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 KCNC4Q03721 635 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 PTK2Q05397 1052 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 CCDC15Q0P6D6 951 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 NFATC3Q12968 1075 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 NR0B2Q15466 257 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 TMEM259Q4ZIN3 620 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 HSP90AA4PQ58FG1 418 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 PRRT3Q5FWE3 981 aa6.7□□□□□ -1.34
CD44-221ENST00000526000 ATXN7L2Q5T6C5 722 aaPredicted RBP6.7□□□□□ -1.34
CD44-221ENST00000526000 OTUD1Q5VV17 481 aaPredicted RBP6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms