RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 TSPAN8P19075 237 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 CHRM3P20309 590 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SKIV2L2P42285 1042 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 GRIA4P48058 902 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 CDK7P50613 346 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DSC2Q02487 901 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DBN1Q16643 649 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SPDYAQ5MJ70 313 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 DENND1CQ8IV53 801 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 CARNMT1Q8N4J0 409 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 HDAC10Q969S8 669 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SUSD3Q96L08 255 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 MARK4Q96L34 752 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 SLC2A13Q96QE2 648 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 VCX3BQ9H321 246 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 EML4Q9HC35 981 aaKnown RBP10.3□□□□□ -0.76
MCF2-209ENST00000520602 GJD2Q9UKL4 321 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 ADAM28Q9UKQ2 775 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 PCDHB8Q9UN66 801 aa10.3□□□□□ -0.76
MCF2-209ENST00000520602 TK2O00142 265 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 GABRDO14764 452 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 USP1O94782 785 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 GLP2RO95838 553 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CCNCP24863 283 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SOX11P35716 441 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 ATP5C1P36542 298 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 NEK3P51956 506 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 LIMK2P53671 638 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CCDC15Q0P6D6 951 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 TRPV1Q8NER1 839 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 RAB3IL1Q8TBN0 382 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 WDR55Q9H6Y2 383 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 RNPEPL1Q9HAU8 725 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 PNPLA8Q9NP80 782 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 EIF2B3Q9NR50 452 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 ARHGEF3Q9NR81 526 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 NDFIP2Q9NV92 336 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 EPS15L1Q9UBC2 864 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SOX13Q9UN79 622 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 ARHGAP26Q9UNA1 814 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 KCNU1A8MYU2 1149 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SUPT3HB4E1H0 165 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 DCLK1O15075 740 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 STX7O15400 261 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 ITM2AO43736 263 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SUPT3HO75486 399 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 S100BP04271 92 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 CCDC166P0CW27 439 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 EPHA3P29320 983 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 NME5P56597 212 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 IRF9Q00978 393 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SLC20A2Q08357 652 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 SH2D4BQ5SQS7 431 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CYP4V2Q6ZWL3 525 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 FRA10AC1Q70Z53 315 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 LPCAT1Q8NF37 534 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 PSMG2Q969U7 264 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 HMCESQ96FZ2 354 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CLPTM1LQ96KA5 538 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 LRGUKQ96M69 825 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 PRKD2Q9BZL6 878 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 RNF208Q9H0X6 261 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 PFDN4Q9NQP4 134 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 RGS18Q9NS28 235 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 OLA1Q9NTK5 396 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 RNF186Q9NXI6 227 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 FAM8A1Q9UBU6 413 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 MATN3O15232 486 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CKMP06732 381 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CKBP12277 381 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 HNRNPLP14866 589 aaKnown RBP eCLIP10.29□□□□□ -0.76
MCF2-209ENST00000520602 HADHAP40939 763 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CSE1LP55060 971 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 CDH18Q13634 790 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 GALNT3Q14435 633 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 TCHHL1Q5QJ38 904 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 CGB2Q6NT52 195 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 PRSS55Q6UWB4 352 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 LRRC8DQ7L1W4 858 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 CCDC97Q96F63 343 aaPredicted RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 CAPNS2Q96L46 248 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 C7orf26Q96N11 449 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 WDR83Q9BRX9 315 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 GPR63Q9BZJ6 419 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 POLR1EQ9GZS1 481 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 RHOJQ9H4E5 214 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 IL1RL2Q9HB29 575 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 UTP6Q9NYH9 597 aaKnown RBP10.29□□□□□ -0.76
MCF2-209ENST00000520602 VPS28Q9UK41 221 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 C15orf41Q9Y2V0 281 aa10.29□□□□□ -0.76
MCF2-209ENST00000520602 FER1L6Q2WGJ9 1857 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 GSC2O15499 205 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 HOXA2O43364 376 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 KRT36O76013 467 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 HOXD8P13378 290 aaPredicted RBP10.28□□□□□ -0.76
MCF2-209ENST00000520602 CYBAP13498 195 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 GATMP50440 423 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 PLD1Q13393 1074 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 DPYSQ14117 519 aa10.28□□□□□ -0.76
MCF2-209ENST00000520602 POTEHQ6S545 545 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms