RNA–Protein interactions for RNA: ENST00000506018.5

NR1I3-222, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 1,380 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-222	ENST00000506018	NEK3	P51956	506 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	NXPH1	P58417	271 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	SNRPD1	P62314	119 aa	Known RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	PPP2CB	P62714	309 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	PPP2CA	P67775	309 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	IL9R	Q01113	521 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	CARD16	Q5EG05	197 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	ARSI	Q5FYB1	569 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	SCYL2	Q6P3W7	929 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	FBXL19	Q6PCT2	694 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	WDR59	Q6PJI9	974 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	ERN2	Q76MJ5	926 aa	Known RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	RYBP	Q8N488	228 aa	Predicted RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	PNPLA1	Q8N8W4	532 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	JOSD2	Q8TAC2	188 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZCCHC14	Q8WYQ9	949 aa	Known RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	CENPI	Q92674	756 aa	Predicted RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	ISG20	Q96AZ6	181 aa	Known RBP	10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	IQCD	Q96DY2	449 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	KLHDC7B	Q96G42	594 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	MRFAP1L1	Q96HT8	127 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	LRIG1	Q96JA1	1093 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	VCPIP1	Q96JH7	1222 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	EPAS1	Q99814	870 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	HDAC8	Q9BY41	377 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	TNKS2	Q9H2K2	1166 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	CATSPERB	Q9H7T0	1116 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	EBF2	Q9HAK2	575 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	IFNK	Q9P0W0	207 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	DNAI1	Q9UI46	699 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZMIZ1	Q9ULJ6	1067 aa		10.63	□□□□□ -0.71
NR1I3-222	ENST00000506018	USP24	Q9UPU5	2620 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018		A0A1B0GTH6	734 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018		A0A1W2PQU0	124 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018		A0A1W2PR77	199 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	LEFTY1	O75610	366 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	LRIG2	O94898	1065 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	LDOC1	O95751	146 aa	Predicted RBP	10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	WNT1	P04628	370 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	CTSL	P07711	333 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	TPM1	P09493	284 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	GLDC	P23378	1020 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ITGB7	P26010	798 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	EPHB2	P29323	1055 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	L1CAM	P32004	1257 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZNF143	P52747	638 aa	Predicted RBP	10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	HDAC4	P56524	1084 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	RPS21	P63220	83 aa	Known RBP	10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ARF5	P84085	180 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	RAD51	Q06609	339 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	SCAP	Q12770	1279 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	PTP4A2	Q12974	167 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	KCNT1	Q5JUK3	1230 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	PIP5KL1	Q5T9C9	394 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	MANEAL	Q5VSG8	457 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ACAD10	Q6JQN1	1059 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	KIAA1161	Q6NSJ0	714 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	DPY19L3	Q6ZPD9	716 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	MON1B	Q7L1V2	547 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	HORMAD1	Q86X24	394 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	PLPP6	Q8IY26	295 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	CASKIN2	Q8WXE0	1202 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ARHGEF2	Q92974	986 aa	Known RBP	10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ARHGEF26	Q96DR7	871 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	FEM1C	Q96JP0	617 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	MCEE	Q96PE7	176 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	PCDHB18P	Q96TA0	734 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	CNPY3	Q9BT09	278 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZDHHC6	Q9H6R6	413 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ARHGAP20	Q9P2F6	1191 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	HECA	Q9UBI9	543 aa	Predicted RBP	10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZNF212	Q9UDV6	495 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	BTBD3	Q9Y2F9	522 aa		10.62	□□□□□ -0.71
NR1I3-222	ENST00000506018	PLXNB3	Q9ULL4	1909 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	KNTC1	P50748	2209 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	EIF3CL	B5ME19	914 aa	Known RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	C10orf142	B7Z368	130 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	SLC31A1	O15431	190 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	FGF10	O15520	208 aa	Predicted RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	CCP110	O43303	1012 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	BUB1	O43683	1085 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	ZMPSTE24	O75844	475 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	KRT37	O76014	449 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	GSR	P00390	522 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	C1S	P09871	688 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	ATXN1L	P0C7T5	689 aa	Known RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	HNRNPA2B1	P22626	353 aa	Known RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	EPHA8	P29322	1005 aa	Predicted RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	CDC25B	P30305	580 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	HTR7	P34969	479 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	HNF1B	P35680	557 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	RXRG	P48443	463 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	CCNH	P51946	323 aa	Predicted RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	METAP1	P53582	386 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	YBEY	P58557	167 aa	Predicted RBP	10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	NR1I3	Q14994	352 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	CCDC157	Q569K6	752 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	SLCO6A1	Q86UG4	719 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	NLRP14	Q86W24	1093 aa		10.61	□□□□□ -0.71
NR1I3-222	ENST00000506018	GATAD2A	Q86YP4	633 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms