RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 INPP1P49441 399 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ZNF132P52740 706 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 PLD1Q13393 1074 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 NOMO2Q5JPE7 1267 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 RAP1GAP2Q684P5 730 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 ZFRQ96KR1 1074 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 SLC9A7Q96T83 725 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 SLC4A5Q9BY07 1137 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 GLOD4Q9HC38 313 aa10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 PRPF19Q9UMS4 504 aaKnown RBP10.9□□□□□ -0.66
LIMCH1-205ENST00000503057 MYO1GB0I1T2 1018 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 LIN7AO14910 233 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 TREHO43280 583 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 ADCY6O43306 1168 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 PAGE1O75459 146 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 ARIH2O95376 493 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 TNFAIP8O95379 198 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 L1CAMP32004 1257 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 TUSC3Q13454 348 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 CERCAMQ5T4B2 595 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 FAM117BQ6P1L5 589 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 EP400NLQ6ZTU2 488 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 CMC1Q7Z7K0 106 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 HS6ST3Q8IZP7 471 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 BHLHE22Q8NFJ8 381 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 STAG3L4Q8TBR4 150 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 RTKNQ9BST9 563 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 NMUR2Q9GZQ4 415 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 PNPOQ9NVS9 261 aa10.9□□□□□ -0.67
LIMCH1-205ENST00000503057 PRR5-ARHGAP8B1AHC4 643 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FKBP9O95302 570 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TRIM16O95361 564 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ZBTB48P10074 688 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ECHS1P30084 290 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FOXN2P32314 431 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 LILRA4P59901 499 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ARHGAP8P85298 464 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 OGDHQ02218 1023 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 GSTA3Q16772 222 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FKBP9P1Q75LS8 142 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 GPR141Q7Z602 305 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ZNF567Q8N184 647 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TERB1Q8NA31 727 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 DCAKDQ8WVC6 231 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FCRL2Q96LA5 508 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TEX12Q9BXU0 123 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ARHGEF3Q9NR81 526 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 XPR1Q9UBH6 696 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 UXTQ9UBK9 157 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 MAGEC1O60732 1142 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 MT-CO1P00395 513 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 CCNCP24863 283 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FMO4P31512 558 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 ATP5C1P36542 298 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 PLK1P53350 603 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 LIMK2P53671 638 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 BTKQ06187 659 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TARBP2Q15633 366 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 SH3PXD2AQ5TCZ1 1133 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TXNRD3NBQ6F5E7 133 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 AFTPHQ6ULP2 937 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 C15orf39Q6ZRI6 1047 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TRAPPC9Q96Q05 1148 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FTHL17Q9BXU8 183 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NMRK2Q9NPI5 230 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 IGSF9Q9P2J2 1179 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 AP4S1Q9Y587 144 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 LAMB2P55268 1798 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 CCDC154A6NI56 674 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 BTN3A1O00481 513 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 PGK1P00558 417 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 WDR4P57081 412 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 B3GNT9Q6UX72 402 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TMEM110Q86TL2 294 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 MON1AQ86VX9 555 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NKAPQ8N5F7 415 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 BHMTQ93088 406 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 DNMT3LQ9UJW3 386 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 PTPRJQ12913 1337 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NHSQ6T4R5 1651 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 A8MUI8 341 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 CKMP06732 381 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 KLF1Q13351 362 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 KCNJ11Q14654 390 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NR6A1Q15406 480 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 CA9Q16790 459 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 PYROXD2Q8N2H3 581 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NETO2Q8NC67 525 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 C10orf82Q8WW14 230 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 NDRG1Q92597 394 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 TMEM79Q9BSE2 394 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 MOSPD1Q9UJG1 213 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 FBXO5Q9UKT4 447 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 CHKBQ9Y259 395 aa10.89□□□□□ -0.67
LIMCH1-205ENST00000503057 SF3B1O75533 1304 aaKnown RBP eCLIP10.89□□□□□ -0.671e-8■■■■■ 160.4
LIMCH1-205ENST00000503057 C15orf38-AP3S2A0A0A6YYH1 394 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 SOWAHAQ2M3V2 549 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 RINLQ6ZS11 566 aa10.88□□□□□ -0.67
LIMCH1-205ENST00000503057 NUDT18Q6ZVK8 323 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms