RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	FAM174A	Q8TBP5	190 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	EPS8L1	Q8TE68	723 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	BAP1	Q92560	729 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	IFT43	Q96FT9	208 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	CLSTN2	Q9H4D0	955 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	GPR27	Q9NS67	375 aa		18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	HELZ2	Q9BYK8	2649 aa	Known RBP	18.79	■□□□□ 0.6
HDAC6-231	ENST00000488905	EIF4E1B	A6NMX2	242 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	RRP8	O43159	456 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	MME	P08473	750 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	GIMD1	P0DJR0	217 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	ALPPL2	P10696	532 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	CCNH	P51946	323 aa	Predicted RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	RPS21	P63220	83 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	GNA12	Q03113	381 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	SLC20A2	Q08357	652 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	NAA35	Q5VZE5	725 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	KYAT3	Q6YP21	454 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	KDM7A	Q6ZMT4	941 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	PARS2	Q7L3T8	475 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	ARC	Q7LC44	396 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	DRC7	Q8IY82	874 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	HEPH	Q9BQS7	1158 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	CAAP1	Q9H8G2	361 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	METTL5	Q9NRN9	209 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	NLGN3	Q9NZ94	848 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	PPARGC1A	Q9UBK2	798 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	DACH1	Q9UI36	760 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	FCF1	Q9Y324	198 aa	Known RBP	18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	RP1	P56715	2156 aa		18.78	■□□□□ 0.6
HDAC6-231	ENST00000488905	MT-CO3	P00414	261 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	CKMT1A	P12532	417 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	ERCC5	P28715	1186 aa	Predicted RBP	18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	L1CAM	P32004	1257 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	DNA2	P51530	1060 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	MAPK8IP2	Q13387	824 aa	Predicted RBP	18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	FGL2	Q14314	439 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905		Q6ZSR6	202 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	TMC6	Q7Z403	805 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	EMC1	Q8N766	993 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	CPA5	Q8WXQ8	436 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	UBL7	Q96S82	380 aa	Predicted RBP	18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	SLC17A9	Q9BYT1	436 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	DNAJC28	Q9NX36	388 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	FADS3	Q9Y5Q0	445 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	LRRK1	Q38SD2	2015 aa		18.77	■□□□□ 0.6
HDAC6-231	ENST00000488905	AP1G1	O43747	822 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	HNRNPK	P61978	463 aa	Known RBP eCLIP	18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	ATP11A	P98196	1134 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	TBC1D25	Q3MII6	688 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	CARD16	Q5EG05	197 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	MANEAL	Q5VSG8	457 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	ZSCAN30	Q86W11	494 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	DCP2	Q8IU60	420 aa	Known RBP	18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	FGF11	Q92914	225 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	APOLD1	Q96LR9	279 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	STK33	Q9BYT3	514 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	TM6SF2	Q9BZW4	377 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	PRORY	Q9H606	182 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	ZDHHC6	Q9H6R6	413 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	PCDHB1	Q9Y5F3	818 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	ACTL7A	Q9Y615	435 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	HS3ST3A1	Q9Y663	406 aa		18.76	■□□□□ 0.59
HDAC6-231	ENST00000488905	LY6G6E	A0A0G2JKS1	128 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	CXorf51A	A0A1B0GTR3	108 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	POM121B	A6NF01	834 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	NEMP2	A6NFY4	417 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	RAD51B	O15315	384 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	CD160	O95971	181 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ACTN2	P35609	894 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ACVRL1	P37023	503 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ETFB	P38117	255 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	NRG1	Q02297	640 aa	Predicted RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	CDO1	Q16878	200 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	RAB6C	Q53S08	254 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ZNF542P	Q5EBM4	170 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	CDCP2	Q5VXM1	449 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	PARG	Q86W56	976 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ZNF677	Q86XU0	584 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ZNF548	Q8NEK5	533 aa	Predicted RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	SLC20A1	Q8WUM9	679 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	ISG20	Q96AZ6	181 aa	Known RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	FEM1C	Q96JP0	617 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	BMF	Q96LC9	184 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	FCRL3	Q96P31	734 aa	Predicted RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	DUSP23	Q9BVJ7	150 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	RAB6C	Q9H0N0	254 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	SAMSN1	Q9NSI8	373 aa	Known RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	NDFIP2	Q9NV92	336 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	NOCT	Q9UK39	431 aa	Known RBP	18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	NEU3	Q9UQ49	428 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905		U3KQA8	63 aa		18.75	■□□□□ 0.59
HDAC6-231	ENST00000488905	KIF26B	Q2KJY2	2108 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	CFAP46	Q8IYW2	2715 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	SPTY2D1-AS1	A0A0U1RR47	76 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905		H3BM21	787 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	SCAMP1	O15126	338 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	OPA1	O60313	960 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	NEBL	O76041	1014 aa		18.74	■□□□□ 0.59
HDAC6-231	ENST00000488905	PAK4	O96013	591 aa	Predicted RBP	18.74	■□□□□ 0.59

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms