RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 CATSPERZQ9NTU4 200 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 PADI3Q9ULW8 664 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 MYBPHLA2RUH7 354 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 MRASO14807 208 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LRIG2O94898 1065 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ENDOD1O94919 500 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CSH1P0DML2 217 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CSH2P0DML3 217 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 PTPN3P26045 913 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 EEF1DP29692 281 aaKnown RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 ATP5C1P36542 298 aaKnown RBP14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LIMK2P53671 638 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 EPHB3P54753 998 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 GALNTL6Q49A17 601 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 FAM45BPQ6NSW5 357 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 LRRC43Q8N309 656 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 FAM45AQ8TCE6 357 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 C10orf82Q8WW14 230 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CYGBQ8WWM9 190 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 CCT7Q99832 543 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.82□□□□□ -0.045e-6■■■□□ 16.8
HDAC6-220ENST00000477528 FBXW11Q9UKB1 542 aa14.82□□□□□ -0.04
HDAC6-220ENST00000477528 RGSL1A5PLK6 1076 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 MSS51Q4VC12 460 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 ACBD5Q5T8D3 534 aaPredicted RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 RETSATQ6NUM9 610 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CLEC4FQ8N1N0 589 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PYDC1Q8WXC3 89 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 GEMIN8Q9NWZ8 242 aaKnown RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PCDHGB4Q9UN71 923 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 LTBP4Q8N2S1 1624 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 UNCXA6NJT0 531 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 TPST1O60507 370 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PLIN3O60664 434 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CCNCP24863 283 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 WLSQ5T9L3 541 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PRMT9Q6P2P2 845 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 DDI1Q8WTU0 396 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 FOPNLQ96NB1 174 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PPP1R10Q96QC0 940 aaKnown RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 ECSITQ9BQ95 431 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 FTHL17Q9BXU8 183 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 ALG9Q9H6U8 611 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PIDD1Q9HB75 910 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CHRAC1Q9NRG0 131 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 MPP6Q9NZW5 540 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 SLC4A7Q9Y6M7 1214 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CAPN15O75808 1086 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 PDE1CQ14123 709 aaPredicted RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 OR6Y1Q8NGX8 325 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 NTAN1Q96AB6 310 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 WDR41Q9HAD4 459 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 MAN1C1Q9NR34 630 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 TEX264Q9Y6I9 313 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 SF3B1O75533 1304 aaKnown RBP eCLIP14.81□□□□□ -0.044e-7■■■■■ 110.4
HDAC6-220ENST00000477528 C2orf71A6NGG8 1288 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 YJEFN3A6XGL0 299 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 ESRRBO95718 433 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 FAM163BP0C2L3 166 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 COL6A2P12110 1019 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CACHD1Q5VU97 1274 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 SPDYE1Q8NFV5 336 aaPredicted RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 RP9Q8TA86 221 aaKnown RBP14.81□□□□□ -0.04
HDAC6-220ENST00000477528 VPS45Q9NRW7 570 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 CCDC167Q9P0B6 97 aa14.81□□□□□ -0.04
HDAC6-220ENST00000477528 ARL5CA6NH57 179 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 PSMC3P17980 439 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 ST8SIA6P61647 398 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 DDR2Q16832 855 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 NCBP2-AS2Q69YL0 99 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 OTOP3Q7RTS5 596 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 RNF148Q8N7C7 305 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 PTCD2Q8WV60 388 aaKnown RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 DLG3Q92796 817 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 SEMA3CQ99985 751 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 GDAP2Q9NXN4 497 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 VPS4BO75351 444 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 GAD2Q05329 585 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 USP4Q13107 963 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 FUT11Q495W5 492 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 PPM1JQ5JR12 505 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 CLEC20AQ6ZU45 233 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 TAC4Q86UU9 113 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 PEBP4Q96S96 227 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 NDNQ99608 321 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 OMDQ99983 421 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 GPBP1L1Q9HC44 474 aaPredicted RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 UTP6Q9NYH9 597 aaKnown RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 KIF17Q9P2E2 1029 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 MYH7BA7E2Y1 1941 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 TMEM247A6NEH6 219 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 PSMD12O00232 456 aaPredicted RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 MSI1O43347 362 aaKnown RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 TSPAN3O60637 253 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 FRG1Q14331 258 aaKnown RBP14.8□□□□□ -0.04
HDAC6-220ENST00000477528 SDHAF4Q5VUM1 108 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 ZNF555Q8NEP9 628 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 SH3GL3Q99963 347 aa14.8□□□□□ -0.04
HDAC6-220ENST00000477528 ADCY6O43306 1168 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms