RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TNNI1P19237 187 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 STAT5AP42229 794 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 ARSDP51689 593 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 SLC8A3P57103 927 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 PFN3P60673 137 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 YWHAGP61981 247 aaKnown RBP eCLIP8.23□□□□□ -1.09
USP54-211ENST00000474929 SGCGQ13326 291 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 C1orf61Q13536 156 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 CHRNA6Q15825 494 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 ARHGAP44Q17R89 818 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 EDRF1Q3B7T1 1238 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 ZNF667Q5HYK9 610 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 PAPD7Q5XG87 772 aaKnown RBP8.23□□□□□ -1.09
USP54-211ENST00000474929 JMJD6Q6NYC1 403 aaPredicted RBP8.23□□□□□ -1.09
USP54-211ENST00000474929 ACOT1Q86TX2 421 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 NRSN1Q8IZ57 195 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 CRYBG2Q8N1P7 616 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 AZIN2Q96A70 460 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 CALML4Q96GE6 196 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 FEM1CQ96JP0 617 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 C1QTNF7Q9BXJ2 289 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 EDEM3Q9BZQ6 932 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 TM6SF1Q9BZW5 370 aa8.23□□□□□ -1.09
USP54-211ENST00000474929 INTS6Q9UL03 887 aaKnown RBP8.23□□□□□ -1.09
USP54-211ENST00000474929 KPNA3O00505 521 aaPredicted RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 CASC3O15234 703 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 EPB41L2O43491 1005 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 PPP6R2O75170 966 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 KIF20AO95235 890 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 RASGRP1O95267 797 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 GAP43P17677 238 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 ADORA2BP29275 332 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 NEK3P51956 506 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 METAP1P53582 386 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 SRSF11Q05519 484 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 ADAM9Q13443 819 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 SEMA5AQ13591 1074 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 ANKRD1Q15327 319 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 ZNF699Q32M78 642 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 ERN2Q76MJ5 926 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 RHOT1Q8IXI2 618 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 NXPE1Q8N323 547 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 CARNMT1Q8N4J0 409 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 C4orf32Q8N8J7 132 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 Q8N9G6 341 aaPredicted RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 GLIS1Q8NBF1 620 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 CHDHQ8NE62 594 aaPredicted RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 TMIEQ8NEW7 156 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 GPR156Q8NFN8 814 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 FRS2Q8WU20 508 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 THAP4Q8WY91 577 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 AK8Q96MA6 479 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 HDAC8Q9BY41 377 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 CLPBQ9H078 707 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 SMYD3Q9H7B4 428 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 MRPL44Q9H9J2 332 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 FAM49BQ9NUQ9 324 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 STIM2Q9P246 746 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 COPG2Q9UBF2 871 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 SLCO3A1Q9UIG8 710 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 CROTQ9UKG9 612 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 SARDHQ9UL12 918 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 ZFR2Q9UPR6 939 aaKnown RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 TMEM184BQ9Y519 407 aaPredicted RBP8.22□□□□□ -1.09
USP54-211ENST00000474929 TACC2O95359 2948 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 TRPM6Q9BX84 2022 aa8.22□□□□□ -1.09
USP54-211ENST00000474929 PKDREJQ9NTG1 2253 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 CROCCQ5TZA2 2017 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 A0A1B0GUH1 482 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 GOLGA8IPA6NC78 632 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 GOLGA8JA6NMD2 632 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 TMEM110-MUSTN1A8MSY1 372 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 AGRPO00253 132 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 AP1G1O43747 822 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 ATP9BO43861 1147 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 PHACTR2O75167 634 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 REC8O95072 547 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 PDGFAP04085 211 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 FDPSP14324 419 aaKnown RBP8.21□□□□□ -1.1
USP54-211ENST00000474929 HTR1BP28222 390 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 STAT1P42224 750 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 CTSOP43234 321 aaPredicted RBP8.21□□□□□ -1.1
USP54-211ENST00000474929 SGSHP51688 502 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 HK3P52790 923 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 NDST1P52848 882 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 LIMK2P53671 638 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 ITGA1P56199 1179 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 ACCSLQ4AC99 568 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 VWA2Q5GFL6 755 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 EFHC1Q5JVL4 640 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 SEL1L3Q68CR1 1132 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 SCARA3Q6AZY7 606 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 STXBP4Q6ZWJ1 553 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 LYSMD3Q7Z3D4 306 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 FAM129CQ86XR2 697 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 ST6GALNAC3Q8NDV1 305 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 OR4D9Q8NGE8 314 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 KIAA1524Q8TCG1 905 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 ARHGEF26Q96DR7 871 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 RPL10LQ96L21 214 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms