RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 IQCDQ96DY2 449 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 TRIM11Q96F44 468 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 SERAC1Q96JX3 654 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 CNTNAP3BQ96NU0 1288 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 HEPHQ9BQS7 1158 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 CNTNAP3Q9BZ76 1288 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 DHX35Q9H5Z1 703 aaKnown RBP18.27■□□□□ 0.52
UPF3A-203ENST00000474056 ZDHHC6Q9H6R6 413 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 DYRK4Q9NR20 520 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 ANGPTL2Q9UKU9 493 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 TPX2Q9ULW0 747 aaKnown RBP18.27■□□□□ 0.52
UPF3A-203ENST00000474056 LUC7L2Q9Y383 392 aaKnown RBP18.27■□□□□ 0.52
UPF3A-203ENST00000474056 BZW2Q9Y6E2 419 aaKnown RBP18.27■□□□□ 0.52
UPF3A-203ENST00000474056 SHROOM3Q8TF72 1996 aa18.27■□□□□ 0.52
UPF3A-203ENST00000474056 RASA4BC9J798 803 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 H0Y8X5 98 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 RASA4O43374 803 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 KDELR3O43731 214 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 LRCH4O75427 683 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 RNF8O76064 485 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 SERPING1P05155 500 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 CD38P28907 300 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 MIPP30301 263 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 CASP14P31944 242 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 C21orf59P57076 290 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 GEMIN4P57678 1058 aaKnown RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 SIM1P81133 766 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 FOXC1Q12948 553 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 ERMARDQ5T6L9 678 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 NAPEPLDQ6IQ20 393 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 ERN2Q76MJ5 926 aaKnown RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 PRPF39Q86UA1 669 aaKnown RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 NETO2Q8NC67 525 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 OR6K2Q8NGY2 324 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 ISG20Q96AZ6 181 aaKnown RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 HMCESQ96FZ2 354 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 PPP1R16AQ96I34 528 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 KCTD15Q96SI1 283 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 PREBQ9HCU5 417 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 HECAQ9UBI9 543 aaPredicted RBP18.26■□□□□ 0.51
UPF3A-203ENST00000474056 LRRK1Q38SD2 2015 aa18.26■□□□□ 0.51
UPF3A-203ENST00000474056 ARID1BQ8NFD5 2236 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 A0A087X0T9 212 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 EEF2KO00418 725 aaKnown RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 FGF10O15520 208 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 RNGTTO60942 597 aaKnown RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 TMCC1O94876 653 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 TOP3BO95985 862 aaKnown RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 FAM228BP0C875 321 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 GKP32189 559 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 YBEYP58557 167 aaPredicted RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 SHC2P98077 582 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 ZNF423Q2M1K9 1284 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 VPS36Q86VN1 386 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 UMODL1-AS1Q8N2C9 162 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 HDAC8Q9BY41 377 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 THAP2Q9H0W7 228 aa18.25■□□□□ 0.51
UPF3A-203ENST00000474056 MRPL47Q9HD33 250 aaKnown RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 MAP1BP46821 2468 aaKnown RBP18.25■□□□□ 0.51
UPF3A-203ENST00000474056 PTPRBP23467 1997 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 ZSCAN5CA6NGD5 496 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 BUB1O43683 1085 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PRPSAP2O60256 369 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 CBFA2T3O75081 653 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 GSRP00390 522 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 ITGB7P26010 798 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 HTR7P34969 479 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 CCT8P50990 548 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 NEK3P51956 506 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 SNRPD1P62314 119 aaKnown RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 IL9RQ01113 521 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 SERINC3Q13530 473 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PRAMEF14Q5SWL7 426 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 ATXN7L2Q5T6C5 722 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 DBX2Q6ZNG2 339 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PARS2Q7L3T8 475 aaKnown RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PLPP6Q8IY26 295 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 RYBPQ8N488 228 aaPredicted RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 OR2AP1Q8NGE2 309 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 SETD7Q8WTS6 366 aaKnown RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 KLK6Q92876 244 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 VOPP1Q96AW1 172 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 CELF6Q96J87 481 aaKnown RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 TSPY26PQ9H489 355 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PCOLCE2Q9UKZ9 415 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 ZFR2Q9UPR6 939 aaKnown RBP18.24■□□□□ 0.51
UPF3A-203ENST00000474056 WASF3Q9UPY6 502 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 CA5BQ9Y2D0 317 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 BTBD3Q9Y2F9 522 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PCDHB9Q9Y5E1 797 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 PCDHGB2Q9Y5G2 931 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 CHD8Q9HCK8 2581 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 SPEGQ15772 3267 aa18.24■□□□□ 0.51
UPF3A-203ENST00000474056 A0A1W2PQU0 124 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 EIF3CLB5ME19 914 aaKnown RBP18.23■□□□□ 0.51
UPF3A-203ENST00000474056 TPM3P06753 285 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 ADRB3P13945 408 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 TCF4P15884 667 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 SPINK2P20155 84 aa18.23■□□□□ 0.51
UPF3A-203ENST00000474056 IL1R2P27930 398 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms