RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 HIPK1Q86Z02 1210 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 FAM172AQ8WUF8 416 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 FAM126AQ9BYI3 521 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-209ENST00000472056 SLC12A4Q9UP95 1085 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 FAM240BA0A1B0GVZ2 78 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 ATMINO43313 823 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-209ENST00000472056 GSTT2BP0CG30 244 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 RRM1P23921 792 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 DSG3P32926 999 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 RPL21P46778 160 aaKnown RBP13.46□□□□□ -0.26
COL6A3-209ENST00000472056 SYCE2Q6PIF2 218 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 SLC30A8Q8IWU4 369 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 TUBGCP5Q96RT8 1024 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 GSDMCQ9BYG8 508 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 TRPC4Q9UBN4 977 aa13.46□□□□□ -0.26
COL6A3-209ENST00000472056 IQSEC2Q5JU85 1478 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 COX4I1P13073 169 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 DGKAP23743 735 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 DLG1Q12959 904 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 FGD3Q5JSP0 725 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 ASS1P00966 412 aaKnown RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CSH1P0DML2 217 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CSH2P0DML3 217 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PWP1Q13610 501 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 LACTB2Q53H82 288 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 KDELC2Q7Z4H8 507 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 MCOLN2Q8IZK6 566 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 COLGALT1Q8NBJ5 622 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 ZCWPW1Q9H0M4 648 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SSU72Q9NP77 194 aaKnown RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 FETUBQ9UGM5 382 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SP100P23497 879 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 ATP5F1P24539 256 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PTGS2P35354 604 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 TIE1P35590 1138 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 RGS7P49802 495 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CLCN5P51795 746 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 ADAMTSL2Q86TH1 951 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 OFCC1Q8IZS5 231 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SYNPO2Q9UMS6 1093 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 BLMHQ13867 455 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PSMD5Q16401 504 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 LSM12Q3MHD2 195 aaKnown RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CLYBLQ8N0X4 340 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 GALNT15Q8N3T1 639 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PTCD2Q8WV60 388 aaKnown RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CRELD1Q96HD1 420 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 RERGLQ9H628 205 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SAE1Q9UBE0 346 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PRDM4Q9UKN5 801 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 COQ6Q9Y2Z9 468 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SNX8Q9Y5X2 465 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PCM1Q15154 2024 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PIGBOS1A0A0B4J2F0 54 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 AKIRIN2Q53H80 203 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 MILR1Q7Z6M3 343 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 C10orf107Q8IVU9 208 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SVOPLQ8N434 492 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 HMGXB4Q9UGU5 601 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 TAF6LQ9Y6J9 622 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 A0A087WZ62 844 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PLOD3O60568 738 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 SMNDC1O75940 238 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 BMP7P18075 431 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 PRDX5P30044 214 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 AVPR1AP37288 418 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 GPD2P43304 727 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 MAGEA2P43356 314 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 USP7Q93009 1102 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 RAVER2Q9HCJ3 691 aaKnown RBP13.45□□□□□ -0.26
COL6A3-209ENST00000472056 CATSPERZQ9NTU4 200 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 MCUBQ9NWR8 336 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 NEURL4Q96JN8 1562 aa13.45□□□□□ -0.26
COL6A3-209ENST00000472056 NTSP30990 170 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 KLK7P49862 253 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 DGCR6Q14129 220 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 SIX5Q8N196 739 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 C2orf69Q8N8R5 385 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 OR6J1Q8NGC5 347 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 LENG9Q96B70 501 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 PRELID1Q9Y255 219 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 AP4B1Q9Y6B7 739 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 NCANO14594 1321 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 SEC22BO75396 215 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 GLRBP48167 497 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 HERC3Q15034 1050 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ZNF720Q7Z2F6 126 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 DNAAF5Q86Y56 855 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TEX47Q8TBZ9 253 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 NELL1Q92832 810 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 YIPF2Q9BWQ6 316 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 CHKBQ9Y259 395 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 FRMPD4Q14CM0 1322 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 RTN3O95197 1032 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-209ENST00000472056 ANXA8L1Q5VT79 327 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 RPTNQ6XPR3 784 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TMC7Q7Z402 723 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TMEM176AQ96HP8 235 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 TRPV5Q9NQA5 729 aa13.44□□□□□ -0.26
COL6A3-209ENST00000472056 NECTIN3Q9NQS3 549 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms