RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 VAT1Q99536 393 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PITX2Q99697 317 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MLXIPLQ9NP71 852 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CASS4Q9NQ75 786 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHGB4Q9UN71 923 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TRAPPC4Q9Y296 219 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHGB5Q9Y5G0 923 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 METTL18O95568 372 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NDST3O95803 873 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CYP2C8P10632 490 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 KRT3P12035 628 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ATICP31939 592 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ABCE1P61221 599 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SLC25A3Q00325 362 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NRG1Q02297 640 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SMAD1Q15797 465 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ZBTB6Q15916 424 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 UGCGQ16739 394 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 XKR7Q5GH72 579 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MTX3Q5HYI7 312 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 LBX2Q6XYB7 198 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RASSF3Q86WH2 238 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MCF2L2Q86YR7 1114 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HPS6Q86YV9 775 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CLEC4FQ8N1N0 589 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RAB2BQ8WUD1 216 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RBBP8Q99708 897 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 DBNDD1Q9H9R9 158 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NTN4Q9HB63 628 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 KLHL3Q9UH77 587 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PSME2Q9UL46 239 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ERVW-1Q9UQF0 538 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 USP1O94782 785 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PIK3R1P27986 724 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 COG7P83436 770 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 IL18R1Q13478 541 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 E2F2Q14209 437 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SYT6Q5T7P8 510 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 LARP4Q71RC2 724 aaKnown RBP eCLIP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 FAM124AQ86V42 546 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ZC3HC1Q86WB0 502 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ZFPM1Q8IX07 1006 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NDUFAF2Q8N183 169 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TSPAN14Q8NG11 270 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ATP2A3Q93084 1043 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ISOC1Q96CN7 298 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HDAC11Q96DB2 347 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NPLQ9BXD5 320 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PCDHA11Q9Y5I1 949 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HSPE1-MOB4S4R3N1 261 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PAPPA2Q9BXP8 1791 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 GPIP06744 558 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PDHA1P08559 390 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CHRM3P20309 590 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HOXA13P31271 388 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NRIP1P48552 1158 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SCARA3Q6AZY7 606 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 DENND5AQ6IQ26 1287 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CYP4F22Q6NT55 531 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 STARD8Q92502 1023 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 DACT3Q96B18 629 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TMEM121Q9BTD3 319 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MEAF6Q9HAF1 191 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TRPC7Q9HCX4 862 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 GPRC5CQ9NQ84 441 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CACNA2D2Q9NY47 1150 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ARMCX1Q9P291 453 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RBM47A0AV96 593 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 GOLGA8IPA6NC78 632 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 GOLGA8JA6NMD2 632 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 UGT2B11O75310 529 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NPPAP01160 153 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 KRT10P13645 584 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RAG1P15918 1043 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 TPP2P29144 1249 aaPredicted RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 MIPP30301 263 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 RFC2P35250 354 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 POLE2P56282 527 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 NLRP11P59045 1033 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 YWHAEP62258 255 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 EPS8Q12929 822 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HADHQ16836 314 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CDO1Q16878 200 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 DEFB115Q30KQ5 88 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 HERC6Q8IVU3 1022 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 SLC35F5Q8WV83 523 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 COX4I2Q96KJ9 171 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 CLK4Q9HAZ1 481 aaKnown RBP5.43□□□□□ -1.54
SYNE1-220ENST00000471834 PSAT1Q9Y617 370 aa5.43□□□□□ -1.54
SYNE1-220ENST00000471834 ALOX5P09917 674 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 PCMT1P22061 227 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 CD68P34810 354 aaPredicted RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 GARSP41250 739 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 TGFB2P61812 414 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 IFITM2Q01629 132 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 HABP4Q5JVS0 413 aaKnown RBP5.42□□□□□ -1.54
SYNE1-220ENST00000471834 UNC93AQ86WB7 457 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 ATL1Q8WXF7 558 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 BTBD6Q96KE9 485 aa5.42□□□□□ -1.54
SYNE1-220ENST00000471834 LRRC4Q9HBW1 653 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms