RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 TTLL2Q9BWV7 592 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TBC1D10AQ9BXI6 508 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ISCUQ9H1K1 167 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ATAD3AQ9NVI7 634 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MAP2P11137 1827 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SHANK2Q9UPX8 1470 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TNFRSF21O75509 655 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ANXA5P08758 320 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PSEN2P49810 448 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CHRDL2Q6WN34 429 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 GET4Q7L5D6 327 aaPredicted RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SETD6Q8TBK2 473 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 KAT5Q92993 513 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CDCA5Q96FF9 252 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 USB1Q9BQ65 265 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 IFT52Q9Y366 437 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ZNF609O15014 1411 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 S100A6P06703 90 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PPM1AP35813 382 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LNX2Q8N448 690 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TEKT5Q96M29 485 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TBATAQ96M53 351 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ZSWIM1Q9BR11 485 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 NAT9Q9BTE0 207 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 DDX18Q9NVP1 670 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CDH9Q9ULB4 789 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PCDHA11Q9Y5I1 949 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TM9SF1O15321 606 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TOP3BO95985 862 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CD86P42081 329 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TUFMP49411 452 aaKnown RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 FXR2P51116 673 aaKnown RBP eCLIP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 HSDL1Q3SXM5 330 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RABL6Q3YEC7 729 aaPredicted RBP13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RAP1GAP2Q684P5 730 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LIN54Q6MZP7 749 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ITFG1Q8TB96 612 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 APOL4Q9BPW4 351 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 C8orf4Q9NR00 106 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 KIAA1257Q9ULG3 409 aa13.39□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 USP41Q3LFD5 358 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 HSDL2Q6YN16 418 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 OR56A4Q8NGH8 313 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CTPS1P17812 591 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TXNRD3Q86VQ6 643 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ATP8B4Q8TF62 1192 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 GPC6Q9Y625 555 aaPredicted RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 KIAA0100Q14667 2235 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SCAMP1O15126 338 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PPATQ06203 517 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 POLLQ9UGP5 575 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MAP3K4Q9Y6R4 1608 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SSTR1P30872 391 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MASP1P48740 699 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RAB25P57735 213 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SNRPFP62306 86 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SLC15A2Q16348 729 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 XRRA1Q6P2D8 792 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MPP5Q8N3R9 675 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 IMP3Q9NV31 184 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ARMCX1Q9P291 453 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 XPR1Q9UBH6 696 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LACTBL1A8MY62 500 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 DCXO43602 365 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 STX11O75558 287 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MED26O95402 600 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 NOS2P35228 1153 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CNTN2Q02246 1040 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CCDC153Q494R4 210 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SBK1Q52WX2 424 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RNASE12Q5GAN4 147 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ZDHHC13Q8IUH4 622 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TBL1YQ9BQ87 522 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 FAM126AQ9BYI3 521 aaPredicted RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 BRINP2Q9C0B6 783 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CDC42EP4Q9H3Q1 356 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 REEP1Q9H902 201 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SLC40A1Q9NP59 571 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 LAMC1P11047 1609 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 GJB6O95452 261 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PAGE2BQ5JRK9 111 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CWF19L1Q69YN2 538 aaKnown RBP13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 GCNT7Q6ZNI0 430 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 DNAAF1Q8NEP3 725 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MYPNQ86TC9 1320 aa13.38□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SMAPO00193 183 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 RECQL4O94761 1208 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 AKR1A1P14550 325 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 EIF2B2P49770 351 aaKnown RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SNRPD1P62314 119 aaKnown RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TBX2Q13207 712 aaPredicted RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 SDHAF4Q5VUM1 108 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 CRTC3Q6UUV7 619 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 APTXQ7Z2E3 356 aaKnown RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 TMEM199Q8N511 208 aa13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 AGO4Q9HCK5 861 aaKnown RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 PHGDHO43175 533 aaKnown RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 MAD2L1Q13257 205 aaPredicted RBP13.37□□□□□ -0.27
NPHP3-ACAD11-201ENST00000471702 ITPK1Q13572 414 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms