RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 RFX6Q8HWS3 928 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 MAP7D3Q8IWC1 876 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 PCDH20Q8N6Y1 951 aaKnown RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 VOPP1Q96AW1 172 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 ARRDC3Q96B67 414 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 FAF2Q96CS3 445 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 C6orf106Q9H6K1 298 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 FBRSQ9HAH7 460 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 PARD6AQ9NPB6 346 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 TMEM74BQ9NUR3 256 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 DONSONQ9NYP3 566 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 LHX3Q9UBR4 397 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 EVLQ9UI08 416 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 GMEB2Q9UKD1 530 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 PACSIN2Q9UNF0 486 aaPredicted RBP11.86□□□□□ -0.51
CUX1-207ENST00000465461 NCKAP1Q9Y2A7 1128 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 CEP192Q8TEP8 1941 aa11.86□□□□□ -0.51
CUX1-207ENST00000465461 ZSCAN5CA6NGD5 496 aaPredicted RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 MUSKO15146 869 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 ARHGAP6O43182 974 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 MAFKO60675 156 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 EPN2O95208 641 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 FTCDO95954 541 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PEX11BO96011 259 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 ADH1BP00325 375 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 IGLV3-19P01714 112 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 RETP07949 1114 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 C7P10643 843 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 C5AR1P21730 350 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 OXTRP30559 389 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 GEMIN4P57678 1058 aaKnown RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 ZBTB16Q05516 673 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 ZNF33AQ06730 810 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 IL10RBQ08334 325 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 ADCY2Q08462 1091 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 SLC10A7Q0GE19 358 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 CNTN1Q12860 1018 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PAFAH1B3Q15102 231 aaKnown RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 MYLK3Q32MK0 819 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 ODF2Q5BJF6 829 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 AADACL2Q6P093 401 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 SLC36A4Q6YBV0 504 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 LZTR1Q8N653 840 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PLD5Q8N7P1 536 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 LRRC57Q8N9N7 239 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 TSEN2Q8NCE0 465 aaKnown RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 CCDC112Q8NEF3 446 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 OR2AP1Q8NGE2 309 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 KIAA1524Q8TCG1 905 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 RUBCNQ92622 972 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PIGKQ92643 395 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 CCDC114Q96M63 670 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 HSPA12BQ96MM6 686 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 HEPHQ9BQS7 1158 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 MAK16Q9BXY0 300 aaKnown RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 BTBD1Q9H0C5 482 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 FSCN3Q9NQT6 498 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 DDX56Q9NY93 547 aaKnown RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 SAE1Q9UBE0 346 aaPredicted RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 GUCA1BQ9UMX6 200 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 FARP1Q9Y4F1 1045 aaPredicted RBP11.85□□□□□ -0.51
CUX1-207ENST00000465461 SLCO1B1Q9Y6L6 691 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 CAPN6Q9Y6Q1 641 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PLXND1Q9Y4D7 1925 aa11.85□□□□□ -0.51
CUX1-207ENST00000465461 PATE3B3GLJ2 98 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 C1QTNF3-AMACRE9PGA6 284 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 ALOX15BO15296 676 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 PSTPIP1O43586 416 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 FSBPO95073 299 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 PIGNO95427 931 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 SEMA4FO95754 770 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 GSRP00390 522 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 CDKN2BP42772 138 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 SNRPD1P62314 119 aaKnown RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 LBRQ14739 615 aaKnown RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 INO80DQ53TQ3 878 aaPredicted RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 DCAF12L1Q5VU92 463 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 FAM46CQ5VWP2 391 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 LYSMD4Q5XG99 296 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 TCEAL6Q6IPX3 200 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 NCEH1Q6PIU2 408 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 SPOCD1Q6ZMY3 1216 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 USP30Q70CQ3 517 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 CYP2U1Q7Z449 544 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 DSG4Q86SJ6 1040 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 NT5DC3Q86UY8 548 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 C11orf74Q86VG3 221 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 CCDC50Q8IVM0 306 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 KIAA2013Q8IYS2 634 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 RGL4Q8IZJ4 473 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 PGBD5Q8N414 524 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 ATPAF2Q8N5M1 289 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.84□□□□□ -0.51
CUX1-207ENST00000465461 TMIEQ8NEW7 156 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 OR14C36Q8NHC7 312 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 SNX19Q92543 992 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 TCEAL3Q969E4 200 aa11.84□□□□□ -0.51
CUX1-207ENST00000465461 ISG20Q96AZ6 181 aaKnown RBP11.84□□□□□ -0.51
CUX1-207ENST00000465461 ZNF419Q96HQ0 510 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 188.9 ms