RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FAM170AA1A519 330 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 NEMP2A6NFY4 417 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 A6NNZ2 444 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 K7ESM1 405 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 RAD51BO15315 384 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 NEBLO76041 1014 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 PAK4O96013 591 aaPredicted RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 GP1BAP07359 652 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 ADRB3P13945 408 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 FLT3P36888 993 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 SERPINH1P50454 418 aaKnown RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 RPS21P63220 83 aaKnown RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 SLC20A2Q08357 652 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 MAPK8IP2Q13387 824 aaPredicted RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 FZD2Q14332 565 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 CAMK4Q16566 473 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 FAM102AQ5T9C2 384 aaPredicted RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 TRNP1Q6NT89 227 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 RETSATQ6NUM9 610 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 BNIPLQ7Z465 357 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 PTAR1Q7Z6K3 402 aaPredicted RBP23.07■■□□□ 1.28
USP4-208ENST00000464168 FEM1CQ96JP0 617 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 HAPLN3Q96S86 360 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 HEPHQ9BQS7 1158 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 CEP44Q9C0F1 390 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 FADS3Q9Y5Q0 445 aa23.07■■□□□ 1.28
USP4-208ENST00000464168 TRPM6Q9BX84 2022 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 MPOP05164 745 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 ITGB7P26010 798 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 L1CAMP32004 1257 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 DNA2P51530 1060 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 HNRNPKP61978 463 aaKnown RBP eCLIP23.06■■□□□ 1.28
USP4-208ENST00000464168 MAN2A1Q16706 1144 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 C2CD6Q53TS8 623 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 CARD16Q5EG05 197 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 KIAA1161Q6NSJ0 714 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 KYAT3Q6YP21 454 aaKnown RBP23.06■■□□□ 1.28
USP4-208ENST00000464168 PCDH20Q8N6Y1 951 aaKnown RBP23.06■■□□□ 1.28
USP4-208ENST00000464168 HIC2Q96JB3 615 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 ZNF578Q96N58 590 aaPredicted RBP23.06■■□□□ 1.28
USP4-208ENST00000464168 OSBPL2Q9H1P3 480 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 PDCL3Q9H2J4 239 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 ATP13A1Q9HD20 1204 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 ACTL7AQ9Y615 435 aa23.06■■□□□ 1.28
USP4-208ENST00000464168 SPTY2D1-AS1A0A0U1RR47 76 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 TEX51A0A1B0GUA7 166 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 CD160O95971 181 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 CYP11B1P15538 503 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 ARF5P84085 180 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 GNA12Q03113 381 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 DRAP1Q14919 205 aaPredicted RBP23.05■■□□□ 1.28
USP4-208ENST00000464168 CFAP57Q96MR6 1250 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 DEPDC7Q96QD5 511 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 DUSP23Q9BVJ7 150 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 ZYG11BQ9C0D3 744 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 NDST4Q9H3R1 872 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 USP29Q9HBJ7 922 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 KLF15Q9UIH9 416 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 TMEM59LQ9UK28 342 aa23.05■■□□□ 1.28
USP4-208ENST00000464168 FCF1Q9Y324 198 aaKnown RBP23.05■■□□□ 1.28
USP4-208ENST00000464168 AP1G1O43747 822 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 USP12O75317 370 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 CSO75390 466 aaKnown RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 DXOO77932 396 aaKnown RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 ZIC2O95409 532 aaPredicted RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 CSF2P04141 144 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 NME1P15531 152 aaKnown RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 LSSP48449 732 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 DUSP3P51452 185 aaPredicted RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 CCNHP51946 323 aaPredicted RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 CXADRP78310 365 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 RAPGEF1Q13905 1077 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 MIIPQ5JXC2 388 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 TAF3Q5VWG9 929 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 PCSK4Q6UW60 755 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 PARS2Q7L3T8 475 aaKnown RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 FAM131BQ86XD5 332 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 MLKLQ8NB16 471 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 ZNF248Q8NDW4 579 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 ZNF548Q8NEK5 533 aaPredicted RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 NAF1Q96HR8 494 aaKnown RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 LGMNQ99538 433 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 KLF6Q99612 283 aaPredicted RBP23.04■■□□□ 1.28
USP4-208ENST00000464168 C1QTNF2Q9BXJ5 285 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 ABCG4Q9H172 646 aa23.04■■□□□ 1.28
USP4-208ENST00000464168 GOLGA8SH3BPF8 625 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 PCBP4P57723 403 aaKnown RBP23.03■■□□□ 1.28
USP4-208ENST00000464168 GABREP78334 506 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 VWA3BQ502W6 1294 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 PARGQ86W56 976 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 DRC7Q8IY82 874 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 LSMEM2Q8N112 164 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 IFI44Q8TCB0 444 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 LENG8Q96PV6 779 aaPredicted RBP23.03■■□□□ 1.28
USP4-208ENST00000464168 POLR1BQ9H9Y6 1135 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 HECAQ9UBI9 543 aaPredicted RBP23.03■■□□□ 1.28
USP4-208ENST00000464168 PPARGC1AQ9UBK2 798 aaKnown RBP23.03■■□□□ 1.28
USP4-208ENST00000464168 FHOD1Q9Y613 1164 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 CSNK1G3Q9Y6M4 447 aa23.03■■□□□ 1.28
USP4-208ENST00000464168 DOCK4Q8N1I0 1966 aa23.02■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms