RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 ERMARDQ5T6L9 678 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 NAPEPLDQ6IQ20 393 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 NEK5Q6P3R8 708 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 LAYNQ6UX15 382 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ERN2Q76MJ5 926 aaKnown RBP16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ZNF354CQ86Y25 554 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 PSTKQ8IV42 348 aaKnown RBP16.42■□□□□ 0.22
COL7A1-203ENST00000459756 NAXDQ8IW45 347 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 UMODL1-AS1Q8N2C9 162 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ARFGAP1Q8N6T3 406 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 CASKIN2Q8WXE0 1202 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ARRDC3Q96B67 414 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL7A1-203ENST00000459756 TRIM7Q9C029 511 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 AASDHPPTQ9NRN7 309 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ARHGAP20Q9P2F6 1191 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 MYO1AQ9UBC5 1043 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 HECAQ9UBI9 543 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-203ENST00000459756 ANGPTL2Q9UKU9 493 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 DMTF1Q9Y222 760 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.42■□□□□ 0.22
COL7A1-203ENST00000459756 WASF2Q9Y6W5 498 aa16.42■□□□□ 0.22
COL7A1-203ENST00000459756 SH3BP5O60239 455 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 GSRP00390 522 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 ITGB7P26010 798 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 MIPP30301 263 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 SIM1P81133 766 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-203ENST00000459756 ACAP1Q15027 740 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 ZNF423Q2M1K9 1284 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 SETMARQ53H47 684 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-203ENST00000459756 KCNT1Q5JUK3 1230 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 RNF214Q8ND24 703 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 LRIG1Q96JA1 1093 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 TM6SF2Q9BZW4 377 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 XPO4Q9C0E2 1151 aaKnown RBP16.41■□□□□ 0.22
COL7A1-203ENST00000459756 DHX35Q9H5Z1 703 aaKnown RBP16.41■□□□□ 0.22
COL7A1-203ENST00000459756 GPATCH2LQ9NWQ4 482 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 PCSK1NQ9UHG2 260 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 PCDHB9Q9Y5E1 797 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 ACTL7AQ9Y615 435 aa16.41■□□□□ 0.22
COL7A1-203ENST00000459756 TMEM131Q92545 1883 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 SPAARA0A1B0GVQ0 90 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 A0A1W2PR77 199 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 RASA4BC9J798 803 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 RASA4O43374 803 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 CBFA2T2O43439 604 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 BUB1O43683 1085 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 MAT2AP31153 395 aaKnown RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 CCT8P50990 548 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 NEK3P51956 506 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 ZNF135P52742 658 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 SNRPD1P62314 119 aaKnown RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 SERINC3Q13530 473 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 SUZ12Q15022 739 aaKnown RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 INO80DQ53TQ3 878 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 DBX2Q6ZNG2 339 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 RYBPQ8N488 228 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 OR2AP1Q8NGE2 309 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 HMCESQ96FZ2 354 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 CAMK1GQ96NX5 476 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 PEBP4Q96S96 227 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 SNRNP25Q9BV90 132 aaKnown RBP16.4■□□□□ 0.22
COL7A1-203ENST00000459756 ZDHHC6Q9H6R6 413 aa16.4■□□□□ 0.22
COL7A1-203ENST00000459756 A0A087X0T9 212 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 A0A1W2PQU0 124 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 H0Y8X5 98 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 RNF103O00237 685 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 EEF2KO00418 725 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 WNT9AO14904 365 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 FLRT2O43155 660 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 PCDHGA12O60330 932 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 RNGTTO60942 597 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 LRCH4O75427 683 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 POP4O95707 220 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 WNT1P04628 370 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 FAM228BP0C875 321 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 HNRNPH3P31942 346 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 CASP14P31944 242 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 PCK1P35558 622 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 NDST2P52849 883 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 TRIP6Q15654 476 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 CA9Q16790 459 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 LEKR1Q6ZMV7 388 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 CYP4V2Q6ZWL3 525 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 IQCHQ86VS3 1027 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 MFSD2AQ8NA29 543 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 SETD7Q8WTS6 366 aaKnown RBP16.39■□□□□ 0.21
COL7A1-203ENST00000459756 OSBPL1AQ9BXW6 950 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 GDF3Q9NR23 364 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 PCOLCE2Q9UKZ9 415 aa16.39■□□□□ 0.21
COL7A1-203ENST00000459756 TP53BP1Q12888 1972 aaPredicted RBP16.38■□□□□ 0.21
COL7A1-203ENST00000459756 CABIN1Q9Y6J0 2220 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 ACACBO00763 2458 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 PRAMEF26H0Y7S4 382 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 TLR4O00206 839 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 KRIT1O00522 736 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 KCNK3O14649 394 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 DAPK3O43293 454 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 MAGEC1O60732 1142 aa16.38■□□□□ 0.21
COL7A1-203ENST00000459756 CBFA2T3O75081 653 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms