RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 BTN2A2Q8WVV5 523 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 RAB7BQ96AH8 199 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ARHGEF26Q96DR7 871 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 APOLD1Q96LR9 279 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 LENG8Q96PV6 779 aaPredicted RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 TBCBQ99426 244 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 POLR1BQ9H9Y6 1135 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 FZD3Q9NPG1 666 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 PLCB1Q9NQ66 1216 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 ZFR2Q9UPR6 939 aaKnown RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 URB1O60287 2271 aaKnown RBP13.56□□□□□ -0.24
HMGB3-204ENST00000448905 SHROOM3Q8TF72 1996 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 KNL1Q8NG31 2342 aa13.56□□□□□ -0.24
HMGB3-204ENST00000448905 PLXNA2O75051 1894 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 TP53BP1Q12888 1972 aaPredicted RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 IGLV3-10A0A075B6K4 115 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 SPTY2D1-AS1A0A0U1RR47 76 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 K7ESM1 405 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 PES1O00541 588 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 LSM8O95777 96 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 RBMS1P29558 406 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 SERPINH1P50454 418 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 GNA12Q03113 381 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 TLE3Q04726 772 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 RAPGEF1Q13905 1077 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 PTK2BQ14289 1009 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 POLD3Q15054 466 aaPredicted RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 CAMK4Q16566 473 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 MAN2A1Q16706 1144 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 TMEM259Q4ZIN3 620 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 VWA3BQ502W6 1294 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 ZNF542PQ5EBM4 170 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 CDCP2Q5VXM1 449 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 SEL1L3Q68CR1 1132 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 ZCCHC8Q6NZY4 707 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 SPACA3Q8IXA5 215 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 ZNF683Q8IZ20 524 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 RYBPQ8N488 228 aaPredicted RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 OR7D4Q8NG98 312 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 ISG20Q96AZ6 181 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 BMFQ96LC9 184 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 IL12RB2Q99665 862 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 DPH1Q9BZG8 443 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 NDST4Q9H3R1 872 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 THSD1Q9NS62 852 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 PPARGC1AQ9UBK2 798 aaKnown RBP13.55□□□□□ -0.24
HMGB3-204ENST00000448905 SALL4Q9UJQ4 1053 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 FADS3Q9Y5Q0 445 aa13.55□□□□□ -0.24
HMGB3-204ENST00000448905 CPED1A4D0V7 1026 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 GADD45BO75293 160 aaPredicted RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 CSO75390 466 aaKnown RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 POP4O95707 220 aaKnown RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 MPOP05164 745 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 CYP11B1P15538 503 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 CDH5P33151 784 aaPredicted RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 TMPRSS3P57727 454 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 GABREP78334 506 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 RAD51Q06609 339 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 DRAP1Q14919 205 aaPredicted RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 TAF1BQ53T94 588 aaPredicted RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 KYAT3Q6YP21 454 aaKnown RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 GCNT7Q6ZNI0 430 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 ARCQ7LC44 396 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 PARGQ86W56 976 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 IRF2BP1Q8IU81 584 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 DRC7Q8IY82 874 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 IFI44Q8TCB0 444 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 ASB12Q8WXK4 309 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 CCDC97Q96F63 343 aaPredicted RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 NAF1Q96HR8 494 aaKnown RBP13.54□□□□□ -0.24
HMGB3-204ENST00000448905 TUBGCP2Q9BSJ2 902 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 C1QTNF7Q9BXJ2 289 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 C1QTNF2Q9BXJ5 285 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 ANLNQ9NQW6 1124 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 OR12D3Q9UGF7 316 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 SNX10Q9Y5X0 201 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 CABIN1Q9Y6J0 2220 aa13.54□□□□□ -0.24
HMGB3-204ENST00000448905 MUC22E2RYF6 1773 aaPredicted RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 IGSF10Q6WRI0 2623 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 POM121BA6NF01 834 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 IGLON5A6NGN9 336 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 GOLGA8SH3BPF8 625 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 TPP1O14773 563 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 AQP9O43315 295 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 ZMPSTE24O75844 475 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 DXOO77932 396 aaKnown RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 GIMD1P0DJR0 217 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 NME1P15531 152 aaKnown RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 TFE3P19532 575 aaPredicted RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 CCNHP51946 323 aaPredicted RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 THOP1P52888 689 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 UBE2HP62256 183 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 RHDQ02161 417 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 PDE1CQ14123 709 aaPredicted RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 FZD2Q14332 565 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 ZNF805Q5CZA5 627 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 RWDD4Q6NW29 188 aaKnown RBP13.53□□□□□ -0.24
HMGB3-204ENST00000448905 TTC7BQ86TV6 843 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 XYLT1Q86Y38 959 aa13.53□□□□□ -0.24
HMGB3-204ENST00000448905 WBP1Q96G27 269 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms