RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 KLHL11Q9NVR0 708 aa14.8□□□□□ -0.04
SDC1-204ENST00000429035 WASF2Q9Y6W5 498 aa14.8□□□□□ -0.04
SDC1-204ENST00000429035 LOC400499M0QZD8 3231 aa14.8□□□□□ -0.04
SDC1-204ENST00000429035 ITPR1Q14643 2758 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 IGLV3-10A0A075B6K4 115 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 NEMP1O14524 444 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 BRINP1O60477 761 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 GJB6O95452 261 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 ITGB7P26010 798 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 GKP32189 559 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 ACVRL1P37023 503 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 ZNF211Q13398 564 aaPredicted RBP14.79□□□□□ -0.04
SDC1-204ENST00000429035 ARL13BQ3SXY8 428 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 RAB6CQ53S08 254 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 CARD16Q5EG05 197 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 ACBD5Q5T8D3 534 aaPredicted RBP14.79□□□□□ -0.04
SDC1-204ENST00000429035 KIAA1161Q6NSJ0 714 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 LEKR1Q6ZMV7 388 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 Q6ZSR6 202 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 SLC25A45Q8N413 288 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 OR4C6Q8NH72 309 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 C1orf74Q96LT6 269 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 NRSN2Q9GZP1 204 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 RAB6CQ9H0N0 254 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 IPO11Q9UI26 975 aaKnown RBP14.79□□□□□ -0.04
SDC1-204ENST00000429035 DNAI1Q9UI46 699 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 ITM2BQ9Y287 266 aa14.79□□□□□ -0.04
SDC1-204ENST00000429035 H3BM21 787 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 NEBLO76041 1014 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 PAK4O96013 591 aaPredicted RBP14.78□□□□□ -0.04
SDC1-204ENST00000429035 MT-CO3P00414 261 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 TPM2P07951 284 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 ERCC5P28715 1186 aaPredicted RBP14.78□□□□□ -0.04
SDC1-204ENST00000429035 SDC4P31431 198 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 L1CAMP32004 1257 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 KLK7P49862 253 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 RPS21P63220 83 aaKnown RBP14.78□□□□□ -0.04
SDC1-204ENST00000429035 E2F1Q01094 437 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 CCDC173Q0VFZ6 552 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 SMYD5Q6GMV2 418 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 DPY19L2P1Q6NXN4 242 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 KYAT3Q6YP21 454 aaKnown RBP14.78□□□□□ -0.04
SDC1-204ENST00000429035 ZNF783Q6ZMS7 281 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 ABI3BPQ7Z7G0 1075 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 RXFP2Q8WXD0 754 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 SLC17A9Q9BYT1 436 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 STK33Q9BYT3 514 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 VPS16Q9H269 839 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 NLRC4Q9NPP4 1024 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 EVA1BQ9NVM1 165 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 CHMP5Q9NZZ3 219 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 HECAQ9UBI9 543 aaPredicted RBP14.78□□□□□ -0.04
SDC1-204ENST00000429035 TMEM59LQ9UK28 342 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 PCDHB1Q9Y5F3 818 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 FADS3Q9Y5Q0 445 aa14.78□□□□□ -0.04
SDC1-204ENST00000429035 POM121BA6NF01 834 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 KRIT1O00522 736 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 RAD51BO15315 384 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 ZMPSTE24O75844 475 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 ETFBP38117 255 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 EIF2S3P41091 472 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 ABL2P42684 1182 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 POLR2FP61218 127 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 HNRNPKP61978 463 aaKnown RBP eCLIP14.77□□□□□ -0.05
SDC1-204ENST00000429035 FGL2Q14314 439 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 RTP5Q14D33 572 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 POLD3Q15054 466 aaPredicted RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 TMEM259Q4ZIN3 620 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 TCP11X2Q5H9J9 407 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 LRRC73Q5JTD7 316 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 JOSD2Q8TAC2 188 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 SLC30A5Q8TAD4 765 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 TBC1D31Q96DN5 1066 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 NAF1Q96HR8 494 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 FEM1CQ96JP0 617 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 APOLD1Q96LR9 279 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 PCMTD1Q96MG8 357 aaPredicted RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 FCRL3Q96P31 734 aaPredicted RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 NAA15Q9BXJ9 866 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 OSBPL2Q9H1P3 480 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 GANQ9H2C0 597 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 FAM207AQ9NSI2 230 aaPredicted RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 NDFIP2Q9NV92 336 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 SEPT11Q9NVA2 429 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 TMEM51Q9NW97 253 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 NLGN3Q9NZ94 848 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 PPARGC1AQ9UBK2 798 aaKnown RBP14.77□□□□□ -0.05
SDC1-204ENST00000429035 ZNF212Q9UDV6 495 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 GGT7Q9UJ14 662 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 HPCAL4Q9UM19 191 aa14.77□□□□□ -0.05
SDC1-204ENST00000429035 PTPRQQ9UMZ3 2332 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 NEMP2A6NFY4 417 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 IGLON5A6NGN9 336 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 FPGTO14772 594 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 ZNF821O75541 412 aaPredicted RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 UGT2B4P06133 528 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 EEF1GP26641 437 aaKnown RBP14.76□□□□□ -0.05
SDC1-204ENST00000429035 ACTN2P35609 894 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 RABIFP47224 123 aa14.76□□□□□ -0.05
SDC1-204ENST00000429035 FMO1Q01740 532 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms