RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 QKIQ96PU8 341 aaKnown RBP eCLIP8.78□□□□□ -13e-9■■■■■ 37
USP40-203ENST00000427112 TMEM209Q96SK2 561 aa8.78□□□□□ -1
USP40-203ENST00000427112 SEPHS2Q99611 448 aa8.78□□□□□ -1
USP40-203ENST00000427112 SLC29A1Q99808 456 aa8.78□□□□□ -1
USP40-203ENST00000427112 CCT7Q99832 543 aa8.78□□□□□ -1
USP40-203ENST00000427112 TMEM79Q9BSE2 394 aa8.78□□□□□ -1
USP40-203ENST00000427112 MLPHQ9BV36 600 aaPredicted RBP8.78□□□□□ -1
USP40-203ENST00000427112 SENP6Q9GZR1 1112 aaPredicted RBP8.78□□□□□ -1
USP40-203ENST00000427112 ABCG8Q9H221 673 aa8.78□□□□□ -1
USP40-203ENST00000427112 EPS8L2Q9H6S3 715 aa8.78□□□□□ -1
USP40-203ENST00000427112 DCDC2Q9UHG0 476 aa8.78□□□□□ -1
USP40-203ENST00000427112 SYNPO2Q9UMS6 1093 aa8.78□□□□□ -1
USP40-203ENST00000427112 SF3B1O75533 1304 aaKnown RBP eCLIP8.77□□□□□ -16e-6■■■■■ 72.9
USP40-203ENST00000427112 SMIM28A0A1B0GU29 152 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 G3V2L1 256 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 H3BNX3 289 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 NR5A2O00482 541 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 TRDMT1O14717 391 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 TREHO43280 583 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 SPAG6O75602 509 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 SOAT2O75908 522 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 RTN3O95197 1032 aaPredicted RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 MYL3P08590 195 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 GRIA3P42263 894 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 BRCC3P46736 316 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 BST2Q10589 180 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 C9orf57Q5W0N0 161 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 KLHDC10Q6PID8 442 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 BEST2Q8NFU1 509 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 DCPSQ96C86 337 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 EXOC2Q96KP1 924 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 FSD1LQ9BXM9 530 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 ALG9Q9H6U8 611 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 SSU72Q9NP77 194 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 PFDN4Q9NQP4 134 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 DDX43Q9NXZ2 648 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 GALNT8Q9NY28 637 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 OR12D3Q9UGF7 316 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 IGKV6D-21A0A0A0MT36 114 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 ERI2A8K979 691 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 DLX3O60479 287 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 HNRNPCL1O60812 293 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 ATP6V1G1O75348 118 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 CPB1P15086 417 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 GABRB3P28472 473 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 CD68P34810 354 aaPredicted RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 SERPINB9P50453 376 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 APLP1P51693 650 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 TAS2R39P59534 338 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 OTUD3Q5T2D3 398 aaPredicted RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 KIAA0319Q5VV43 1072 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 MFN1Q8IWA4 741 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 OR6J1Q8NGC5 347 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 ZFP28Q8NHY6 868 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 CXorf38Q8TB03 319 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 ZNF670Q9BS34 389 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 MAP3K20Q9NYL2 800 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 GCATO75600 419 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 MTHFD1P11586 935 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 PROZP22891 400 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 PTPN7P35236 360 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 IL1RL1Q01638 556 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 DMPKQ09013 629 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 CCDC92Q53HC0 331 aaPredicted RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 GRAMD4Q6IC98 578 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 KYAT3Q6YP21 454 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 ACAD11Q709F0 780 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 MIB1Q86YT6 1006 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 B3GALNT2Q8NCR0 500 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 PDCD6IPQ8WUM4 868 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 KBTBD7Q8WVZ9 684 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 WDCPQ9H6R7 721 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 LTB4R2Q9NPC1 389 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 CDYLQ9Y232 598 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 TIMM22Q9Y584 194 aa8.77□□□□□ -1.01
USP40-203ENST00000427112 COPG1Q9Y678 874 aaKnown RBP8.77□□□□□ -1.01
USP40-203ENST00000427112 UBA6A0AVT1 1052 aaPredicted RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 LIN7AO14910 233 aaPredicted RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 LRIG2O94898 1065 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 AOC1P19801 751 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 CRABP2P29373 138 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 HOXA11P31270 313 aaPredicted RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 TRIM67Q6ZTA4 783 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 RIOX2Q8IUF8 465 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 MFSD6LQ8IWD5 586 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.76□□□□□ -1.01
USP40-203ENST00000427112 DNAJB14Q8TBM8 379 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 RBBP8Q99708 897 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 TSC22D4Q9Y3Q8 395 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 WDR81Q562E7 1941 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 RNF103-CHMP3A0A140T963 221 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 FAM95CA0A1B0GW59 222 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 PGK1P00558 417 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 MCF2P10911 925 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 PAX3P23760 479 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 RPL14P50914 215 aaKnown RBP8.76□□□□□ -1.01
USP40-203ENST00000427112 MYBPC1Q00872 1141 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 NIPAL4Q0D2K0 466 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 NEDD8Q15843 81 aa8.76□□□□□ -1.01
USP40-203ENST00000427112 TAZQ16635 292 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms