RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 MPPE1Q53F39 396 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TRIM40Q6P9F5 258 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TMC5Q6UXY8 1006 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 HJURPQ8NCD3 748 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 REPS2Q8NFH8 660 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 EDEM1Q92611 657 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ANKS1AQ92625 1134 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ZFRQ96KR1 1074 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ACE2Q9BYF1 805 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 POPDC2Q9HBU9 364 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 SETBP1Q9Y6X0 1596 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TPD52L2O43399 206 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 LARGE1O95461 756 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CHRNGP07510 517 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PLEKP08567 350 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TRMT5Q32P41 509 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF549Q6P9A3 640 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 RIPOR1Q6ZS17 1223 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DAGLBQ8NCG7 672 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IGDCC4Q8TDY8 1250 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 SELENOMQ8WWX9 145 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 HIST1H2AAQ96QV6 131 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 INTS10Q9NVR2 710 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 THAP1Q9NVV9 213 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TMX2Q9Y320 296 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CCDC162PA2VCL2 907 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CAPN14A8MX76 684 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 FARP2O94887 1054 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CDH5P33151 784 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ERFP50548 548 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CHN2P52757 468 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PRKAG1P54619 331 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CDC42P60953 191 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DNAJC3Q13217 504 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TERF2Q15554 542 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TMEM164Q5U3C3 297 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CHSY3Q70JA7 882 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IFNL1Q8IU54 200 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 C4orf19Q8IY42 314 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 GJD3Q8N144 294 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 NKAPQ8N5F7 415 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 EFCAB3Q8N7B9 438 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 MTFMTQ96DP5 389 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CMTM6Q9NX76 183 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CLIC5Q9NZA1 410 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TSPAN16Q9UKR8 245 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 USP20Q9Y2K6 914 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 FCHO1O14526 889 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TLX3O43711 291 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CLPTM1O96005 669 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 SERPINA1P01009 418 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 VIL1P09327 827 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 HDCP19113 662 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 KCNA5P22460 613 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 FMO4P31512 558 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ACLYP53396 1101 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 UGT2B15P54855 530 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CBX2Q14781 532 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 C16orf59Q7L2K0 433 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TAF8Q7Z7C8 310 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DHFR2Q86XF0 187 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 NRSN1Q8IZ57 195 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 GPC2Q8N158 579 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 LINC00116Q8NCU8 138 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 STAG3L4Q8TBR4 150 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PHF10Q8WUB8 498 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 WDR60Q8WVS4 1066 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 NELL1Q92832 810 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 FAM118BQ9BPY3 351 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 MMADHCQ9H3L0 296 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 SLC24A3Q9HC58 644 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 NEXMIFQ5QGS0 1516 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IQCMA0A1B0GVH7 501 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TRDMT1O14717 391 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PAEPP09466 180 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 INSRRP14616 1297 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 UBA1P22314 1058 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ERVK-9P63128 1117 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ERVK-24P63145 666 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 SP3Q02447 781 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ZNF268Q14587 947 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ATP13A5Q4VNC0 1218 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CACUL1Q86Y37 369 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ARMC8Q8IUR7 673 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 HTR3CQ8WXA8 447 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 C18orf25Q96B23 403 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IRX2Q9BZI1 471 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 TBC1D14Q9P2M4 693 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 CRNNQ9UBG3 495 aaPredicted RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DMGDHQ9UI17 866 aaKnown RBP6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ABHD14A-ACY1A0A1B0GW23 586 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ISM1B1AKI9 464 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 IDH3BO43837 385 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ELFN1P0C7U0 828 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 ITPKBP27987 946 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 PPATQ06203 517 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DDI2Q5TDH0 399 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 C11orf63Q6NUN7 778 aa6.93□□□□□ -1.3
SCN1A-204ENST00000423058 DET1Q7L5Y6 550 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms