RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 RNF103O00237 685 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 LZTS3O60299 673 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HMGB2P26583 209 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CAPGP40121 348 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HADHAP40939 763 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MS4A2Q01362 244 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SLC13A2Q13183 592 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 UBE2UQ5VVX9 321 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TDRD10Q5VZ19 366 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SNRNP48Q6IEG0 339 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SDE2Q6IQ49 451 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ANGPTL8Q6UXH0 198 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 FAM131BQ86XD5 332 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF276Q8N554 614 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 AMER2Q8N7J2 671 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 BEST2Q8NFU1 509 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ITFG1Q8TB96 612 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 COG8Q96MW5 612 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NEK6Q9HC98 313 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NSMCE4AQ9NXX6 385 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NYAP2Q9P242 653 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 XPR1Q9UBH6 696 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ERGIC3Q9Y282 383 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MTF2Q9Y483 593 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NUMBLQ9Y6R0 609 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 C3P01024 1663 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PNMA8CA0A1B0GUJ8 204 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 UBA6A0AVT1 1052 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 EVPLLA8MZ36 301 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TMEM114B3SHH9 223 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MTSS1O43312 755 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF37AP17032 561 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ETV4P43268 484 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TUBA1BP68363 451 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 RHDQ02161 417 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NFATC3Q12968 1075 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 RBBP7Q16576 425 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 LIPMQ5VYY2 423 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CHSY3Q70JA7 882 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TUBA1AQ71U36 451 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ARMC8Q8IUR7 673 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ELMOD2Q8IZ81 293 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TTC30BQ8N4P2 665 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CNTD1Q8N815 330 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 OR52K1Q8NGK4 314 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NSUN6Q8TEA1 469 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HDAC2Q92769 488 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ASB9Q96DX5 294 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CENPNQ96H22 339 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 RNF157Q96PX1 679 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PRRG3Q9BZD7 231 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TDRD3Q9H7E2 651 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 VAV3Q9UKW4 847 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 TPRKBQ9Y3C4 175 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 FAM47E-STBD1D6RA91 191 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ZBTB14O43829 449 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 RFPL1O75677 317 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PSMD10O75832 226 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 RSL1D1O76021 490 aaKnown RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CDH1P12830 882 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HLA-DPA1P20036 260 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NFIAQ12857 509 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 HERC3Q15034 1050 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 STILQ15468 1287 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 CEP78Q5JTW2 689 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ARHGAP36Q6ZRI8 547 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MPP5Q8N3R9 675 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 Q8N9G6 341 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF540Q8NDQ6 660 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 ZNF420Q8TAQ5 688 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-201ENST00000399429 NXNL1Q96CM4 212 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SLC29A1Q99808 456 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 SIAEQ9HAT2 523 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 USE1Q9NZ43 259 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHGB4Q9UN71 923 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHGB5Q9Y5G0 923 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 U3KQV3 271 aa9.42□□□□□ -0.9
COL28A1-201ENST00000399429 MYPNQ86TC9 1320 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SETD1AO15047 1707 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 TSPAN4O14817 238 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 PTGS2P35354 604 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 GMPRP36959 345 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 GRIA1P42261 906 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 CRKP46108 304 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 RAB14P61106 215 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 GTF2BQ00403 316 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 TNK2Q07912 1038 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ILF2Q12905 390 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 PPIL2Q13356 520 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 AGAP9Q5VTM2 703 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 MBLAC2Q68D91 279 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 BORAQ6PGQ7 559 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 THAP5Q7Z6K1 395 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 IGFN1Q86VF2 1251 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 SARS2Q9NP81 518 aaKnown RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 FBXO28Q9NVF7 368 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 ATF5Q9Y2D1 282 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-201ENST00000399429 KLHL20Q9Y2M5 609 aa9.41□□□□□ -0.9
COL28A1-201ENST00000399429 PCDHGA3Q9Y5H0 932 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms